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mmu_circUnc80_3958
Basic information of circular RNA
PanCircBase ID:
mmu_circUnc80_3958
mm39_Chr. Position ID:
chr1|66542688|66657428|+
Gene name:
Unc80
Transcript:
ENSMUST00000061620.17
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
23
Exon/intron indexes:
8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30
Exon/intron offsets:
0,1393,3100,3796,5737,7020,17925,22113,24342,26442,27225,46198,47416,48624,51397,66260,86665,90135,97525,102922,104862,108558,114632
Genomic length:
114740
Exon/intron sizes in nt:
26,21,35,21,71,41,26,90,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:66530290-66542688|chr1:66657428-66658583
Splice length:
3958
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGCCTCACTTGTGATACCACCATGCCAGAGGTCACGCTATGCCACCTACTTCGATGTTGCCGTTCTCCGCTGCCTTCTCCAGCCCCACTGGTCTGAGGAAGGCACTCAGTGGTCTCTGATGTACTATCTACAAAGGCTGCGACACATGCTGGAAGAGAAACCAGAAAAGACCCCAGATCCAGATATTCCTCTGCTGCCCAGGCCCAGAAGTAGCTCGATGGTGGCAGCAGCTCCCTCACTGGTGAACACCCACAAGACTCAAGATCTCACCATGAAGTGTAATGAAGAAGAAAAATCTCTGAGCCCTGAGGCTTTTTCCAAAGTCTCATTGACCAATCTCCGAAGATCTGCCGTCCCAGATCTATCTTCAGATCTGGGCATGAACATTTTTAAAAAGTTCAAAAGTCGCAAAGAAGACCGAGAGAGGAAGGGCTCCATTCCATTCCACCACACGGGGAAGAGGAGACCTAGACGAATGGGTGTACCATTCCTGCTGCATGAGGACCACCTAGACGTCTCACCTACCCGCAGCACATTCTCTTTTGGCAGTTTCTCTGGGCTTGGAGAAGATAGGAGAGGCATTGAAAAGGGAGGCTGGCAAACCACCATCTTAGGGAAGCTGACCCGGCGGGGCAGCTCAGATGCAGCCACTGAGATGGAAAGTCTGAGCGCCAGGCACTCGCACTCCCACCACACCCTGGTGAGCGACCTGCCAGACCACTCCAACAGCCACGGAGAGAACACTGTCAAGGAAGTGCGATCTCAGATCTCCACCATCACAGTTGCGACCTTCAACACTACGCTGGCATCATTCAATGTAGGCTACGCGGACTTCTTCAGTGAACACATGAGGAAGCTCTGCAGCCAGGTGCCTATCCCAGAGATGCCACATGAGCCTCTGGCATGTGCCAACCTGCCACGAAGCCTCACAGACTCCTGCATAAACTACAGCTACCTGGAGGACACAGAACATATTGATGGCACGAACAACTTTGTCCATAAGAACGGCATGCTGGATCTCTCTGTGGTTCTGAAGGCTGTTTATCTCGTTCTCAACCATGACATCAGCTCTCGCATCTGTGATGTGGCACTTAACATTGTGGAATGTTTGCTTCAACTTGGGGTAGTTCCCTGTGTAGAAAAAAACAGGAAGAAAAGTGAAAACAAGGAAAATGAGTCTGTGGAAAAGAGACCAAGTGAGGGAGCCTTCCAGTTCAAAGGCGTGTCTTCAAGTTCCACCAGTGGGTTTGGGGCCCCTTCCGCTAGTGGAGCTGGAGATGGTGGAGGAGAAGAAGGAGGAGGTGGAGATGGAGGAGGAGGAGGTGGAGGAGGAGATGGAGGAGGAGGTGGAGGAGGTGGAGGTGGCCCTTATGAGAAGAATGAGAAGAACCAAGAGAAGGATGACAACATCCCTGTAAGCAACCATAGGCTTGCTCTTACTATGCTCATCAAAATAGTCAAGTCACTGGGATGTGCCTATGGTTGCGGAGAAGGACATCGAGGGCTCTCTGGAGATCGCCTGAGACACCAGGTATTCCGAGAGAATGCCCAGAACTGCCTTACTAAGCTGTACAAGCTAGATAAAATACAGTTCCGACAAACCATGAGGGACTATGTGAACAAGGACTCTCTCAATAATGTAGTGGACTTCTTGCATGCTTTGCTAGGATTTTGTATGGAGCCGGTCACTGACAACAAAGCTGGGTTTGGAAATAACTTCACCACAGTGGACAACAAGTCCACAGCCCAAAATGTGGAAGGCATTATTGTCGGTGCCATGTTCAAGTCTCTCATCACACGCTGTGCCTCAACCACACATGAACTCCACAGCCCTGAGAATCTGGGACTGTACTGTGACATCCGCCAGCTGGTTCAGTTTATCAAAGAAGCTCATGGGAATGTCTTCAGGAGAGTGGCTCTTAGTGCCCTGCTTGATAGTGCTGAAAAGTTAGCACCAGGGAAAAAGGTGGAAGAGAATGGACAGGAGTCTAAGCCTGTGGGCAGTAAAAGGTCAGAAGCAGGAAGCATTGCAGATAAAGGCCAGGTATCGTCAGCACCTGAGGAATGTCGAAGCTTCATGTCTGGTCGCCCCTCACAGACCCCAGAACATGATGAACCAATGCAAGGGGGCAACCTGGGACGGAAAGATTTCTGGCGCAAGATGTTCAAATCCCAAAGCGCAGCAAGTGACACCAGCAGCCAGTCTGAGCAGGATACCTCGGAATGTACCACAGCCCACTCAGGGAACACCTCTGACCGGCGTGCCCGCTCACGATCCCGCAGAATCTCCCTGCGAAAGAAGTTGAAACTCCCCATAGGAAACTGGCTGAAGCGCTCCTCCCTCTCTGGCCTGGCAGATGGTGTAGAGGACCTCCTGGACATTAGCTCTGTGGATCGCCTGTCTTTCATCAGGCAAAGCTCCAAGGTCAAGTTCACCAGCGCTGTCAAGCTCTCAGAAGGTGGACCAGGGAGTGGGATGGAGAATGGACGAGAAGAGGAGGAGAATTTCTTCAAGCGTCTTGGCTGCCACAGTTTCGATGACCACCTTTCACCCAACCAAGATGGTGGGAAAAGCAAAAACGTGGTGAATCTGGGAGCAATCCGACAAGGCATGAAACGTTTTCAATTCCTGTTGAACTGCTGTGAGCCAGGGACAATTCCTGATGCATCCATCCTAGCTGCTGCCTTGGACTTAGAAGCTCCTGTGGTGGCCAGAGCAGCTCTGTTCCTCGAATGTGCCCGTTTTGTCCACCGGTGCAACCGTGGCAATTGGCCCGAGTGGATGAAAGGGCACCACGTGAACATCACCAAGAAAGGCCTTTCCCGGGGCAGGTCTCCCACCGTGGGCAACAAGCGGAACCAGAAGCTTCAGTGGAGTGCTGCCAAGCTCTTCTACCAGTGGGGAGATGCAATTGGCATCCGATTGAATGAGCTGTGCCATGGAGAGAGCGAGAGTCCTGCCAACCTGCTCGGCCTTATCTATGATGAGGAAACCAAGAGAAGACTGCGGAAGGAGGATGAGGAGGAAGACTTTTTAGATGACAGTACTGTGAACCCCTCTAAATGTGGCTGTCCCTTTGCCTTGAAGATGGCAGCATGCCAACTTCTCCTGGAGATAACCACCTTCCTGAGGGAGACTTTTTCATGCCTGCCTAGACCTCGCACTGAGCCCCTCGTGGACTTGGAAAGCTGCAGGCTTCGTCTGGACCCTGAATTGGACCGGCACAGATATGAGAGGAAGATCAGCTTTGCAGGAGTTCTGGATGAAAATGAAGACTCAAAAGATTCTCTGCACAGCAGCAGCCACACCATCAAATCAGACGCAGGTGCTGAAGAGAAGAAAGTTCCCAGCAGGAAGATCAGGATAGGAGGTTCTCGACTGCTCCAGATTAAAGGAACCCGCAGTTTCCAGGTGAAGAAGGGGGGTTCCTTGTCCAGCATTCGCCGAGTCGGCAGCTTAAAGAGCAGCAAGTTATCACGGCAGGACTCAGAGTCTGAGGCTGAGGAGCTGCAGCTGTCCCAGAGCAGGGACACTGTCACTGACCTAGAAGGAAGTCCTTGGAGTGCAAGTGAACCCAGCATTGAGCCTGAGGGACTGAGCAATGCCGGCACAGAGGAAAACTACCACAGAAACATGTCGTGGCTTCACGTCATGATCTTACTCTGCAATCAACAAAGTTTCATTTGTACACATGTGGACTACTGCCATCCACACTGCTACCTGCACCACAGCCGCTCCTGTGCCCGGCTGGTCAGGGCCATTAAATTGCTGTATGGGGACAGTGTGGACTCCCTGCGTGAGAGCAACCACATCAGCAACGTGGCTCTGAGGGGCAAGAAACAGAAAGAGTGCTCAGATAAGTCATGCCTGAGGACACCTTCCCTGAAGAAGAGAGTTTCGGATGTCAACCTGGAAGGAAAAAAGGACTCGGGAATGCTGAAGTACATCAGGTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCATGCCTGAGGACACCTT
59.67
CGAAGTAGGTGGCATAGCGT
59.9
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGTCATGCCTGAGGACACC
59.67
CGAAGTAGGTGGCATAGCGT
59.9
152
PCR template sequence:
TAAGTCATGCCTGAGGACACCTTCCCTGAAGAAGAGAGTTTCGGATGTCAACCTGGAAGGAAAAAAGGACTCGGGAATGCTGAAGTACATCAGGTTTCAGGGCCTCACTTGTGATACCACCATGCCAGAGGTCACGCTATGCCACCTACTTCGATGTTGCCGTTCTCCGCTGCCTTCTCCAGCCCCACTGGTCTGAGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-207(4), mmu-miR-335-3p(3), mmu-miR-183-5p(2), mmu-miR-338-3p(2), mmu-miR-27a-3p(1), mmu-miR-101a-3p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-33-5p(1), mmu-miR-30c-5p(1), mmu-miR-298-5p(1), mmu-miR-101b-3p(1), mmu-miR-132-3p(1), mmu-miR-214-3p(1), mmu-miR-22-3p(1), mmu-miR-212-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-382-5p(1), mmu-miR-511-3p(1), mmu-miR-467b-5p(1), mmu-miR-370-3p(1), mmu-miR-666-5p(1), mmu-miR-705(1), mmu-miR-325-3p(1), mmu-miR-680(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-484(1), mmu-miR-1199-5p(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-3061-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATCAGGTTTCAGGGCCTCACTTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUNC80_3958_ORF_1
0.8484
0.284671561
1
3936
ORF sequence:
ATGTACTATCTACAAAGGCTGCGACACATGCTGGAAGAGAAACCAGAAAAGACCCCAGATCCAGATATTCCTCTGCTGCCCAGGCCCAGAAGTAGCTCGATGGTGGCAGCAGCTCCCTCACTGGTGAACACCCACAAGACTCAAGATCTCACCATGAAGTGTAATGAAGAAGAAAAATCTCTGAGCCCTGAGGCTTTTTCCAAAGTCTCATTGACCAATCTCCGAAGATCTGCCGTCCCAGATCTATCTTCAGATCTGGGCATGAACATTTTTAAAAAGTTCAAAAGTCGCAAAGAAGACCGAGAGAGGAAGGGCTCCATTCCATTCCACCACACGGGGAAGAGGAGACCTAGACGAATGGGTGTACCATTCCTGCTGCATGAGGACCACCTAGACGTCTCACCTACCCGCAGCACATTCTCTTTTGGCAGTTTCTCTGGGCTTGGAGAAGATAGGAGAGGCATTGAAAAGGGAGGCTGGCAAACCACCATCTTAGGGAAGCTGACCCGGCGGGGCAGCTCAGATGCAGCCACTGAGATGGAAAGTCTGAGCGCCAGGCACTCGCACTCCCACCACACCCTGGTGAGCGACCTGCCAGACCACTCCAACAGCCACGGAGAGAACACTGTCAAGGAAGTGCGATCTCAGATCTCCACCATCACAGTTGCGACCTTCAACACTACGCTGGCATCATTCAATGTAGGCTACGCGGACTTCTTCAGTGAACACATGAGGAAGCTCTGCAGCCAGGTGCCTATCCCAGAGATGCCACATGAGCCTCTGGCATGTGCCAACCTGCCACGAAGCCTCACAGACTCCTGCATAAACTACAGCTACCTGGAGGACACAGAACATATTGATGGCACGAACAACTTTGTCCATAAGAACGGCATGCTGGATCTCTCTGTGGTTCTGAAGGCTGTTTATCTCGTTCTCAACCATGACATCAGCTCTCGCATCTGTGATGTGGCACTTAACATTGTGGAATGTTTGCTTCAACTTGGGGTAGTTCCCTGTGTAGAAAAAAACAGGAAGAAAAGTGAAAACAAGGAAAATGAGTCTGTGGAAAAGAGACCAAGTGAGGGAGCCTTCCAGTTCAAAGGCGTGTCTTCAAGTTCCACCAGTGGGTTTGGGGCCCCTTCCGCTAGTGGAGCTGGAGATGGTGGAGGAGAAGAAGGAGGAGGTGGAGATGGAGGAGGAGGAGGTGGAGGAGGAGATGGAGGAGGAGGTGGAGGAGGTGGAGGTGGCCCTTATGAGAAGAATGAGAAGAACCAAGAGAAGGATGACAACATCCCTGTAAGCAACCATAGGCTTGCTCTTACTATGCTCATCAAAATAGTCAAGTCACTGGGATGTGCCTATGGTTGCGGAGAAGGACATCGAGGGCTCTCTGGAGATCGCCTGAGACACCAGGTATTCCGAGAGAATGCCCAGAACTGCCTTACTAAGCTGTACAAGCTAGATAAAATACAGTTCCGACAAACCATGAGGGACTATGTGAACAAGGACTCTCTCAATAATGTAGTGGACTTCTTGCATGCTTTGCTAGGATTTTGTATGGAGCCGGTCACTGACAACAAAGCTGGGTTTGGAAATAACTTCACCACAGTGGACAACAAGTCCACAGCCCAAAATGTGGAAGGCATTATTGTCGGTGCCATGTTCAAGTCTCTCATCACACGCTGTGCCTCAACCACACATGAACTCCACAGCCCTGAGAATCTGGGACTGTACTGTGACATCCGCCAGCTGGTTCAGTTTATCAAAGAAGCTCATGGGAATGTCTTCAGGAGAGTGGCTCTTAGTGCCCTGCTTGATAGTGCTGAAAAGTTAGCACCAGGGAAAAAGGTGGAAGAGAATGGACAGGAGTCTAAGCCTGTGGGCAGTAAAAGGTCAGAAGCAGGAAGCATTGCAGATAAAGGCCAGGTATCGTCAGCACCTGAGGAATGTCGAAGCTTCATGTCTGGTCGCCCCTCACAGACCCCAGAACATGATGAACCAATGCAAGGGGGCAACCTGGGACGGAAAGATTTCTGGCGCAAGATGTTCAAATCCCAAAGCGCAGCAAGTGACACCAGCAGCCAGTCTGAGCAGGATACCTCGGAATGTACCACAGCCCACTCAGGGAACACCTCTGACCGGCGTGCCCGCTCACGATCCCGCAGAATCTCCCTGCGAAAGAAGTTGAAACTCCCCATAGGAAACTGGCTGAAGCGCTCCTCCCTCTCTGGCCTGGCAGATGGTGTAGAGGACCTCCTGGACATTAGCTCTGTGGATCGCCTGTCTTTCATCAGGCAAAGCTCCAAGGTCAAGTTCACCAGCGCTGTCAAGCTCTCAGAAGGTGGACCAGGGAGTGGGATGGAGAATGGACGAGAAGAGGAGGAGAATTTCTTCAAGCGTCTTGGCTGCCACAGTTTCGATGACCACCTTTCACCCAACCAAGATGGTGGGAAAAGCAAAAACGTGGTGAATCTGGGAGCAATCCGACAAGGCATGAAACGTTTTCAATTCCTGTTGAACTGCTGTGAGCCAGGGACAATTCCTGATGCATCCATCCTAGCTGCTGCCTTGGACTTAGAAGCTCCTGTGGTGGCCAGAGCAGCTCTGTTCCTCGAATGTGCCCGTTTTGTCCACCGGTGCAACCGTGGCAATTGGCCCGAGTGGATGAAAGGGCACCACGTGAACATCACCAAGAAAGGCCTTTCCCGGGGCAGGTCTCCCACCGTGGGCAACAAGCGGAACCAGAAGCTTCAGTGGAGTGCTGCCAAGCTCTTCTACCAGTGGGGAGATGCAATTGGCATCCGATTGAATGAGCTGTGCCATGGAGAGAGCGAGAGTCCTGCCAACCTGCTCGGCCTTATCTATGATGAGGAAACCAAGAGAAGACTGCGGAAGGAGGATGAGGAGGAAGACTTTTTAGATGACAGTACTGTGAACCCCTCTAAATGTGGCTGTCCCTTTGCCTTGAAGATGGCAGCATGCCAACTTCTCCTGGAGATAACCACCTTCCTGAGGGAGACTTTTTCATGCCTGCCTAGACCTCGCACTGAGCCCCTCGTGGACTTGGAAAGCTGCAGGCTTCGTCTGGACCCTGAATTGGACCGGCACAGATATGAGAGGAAGATCAGCTTTGCAGGAGTTCTGGATGAAAATGAAGACTCAAAAGATTCTCTGCACAGCAGCAGCCACACCATCAAATCAGACGCAGGTGCTGAAGAGAAGAAAGTTCCCAGCAGGAAGATCAGGATAGGAGGTTCTCGACTGCTCCAGATTAAAGGAACCCGCAGTTTCCAGGTGAAGAAGGGGGGTTCCTTGTCCAGCATTCGCCGAGTCGGCAGCTTAAAGAGCAGCAAGTTATCACGGCAGGACTCAGAGTCTGAGGCTGAGGAGCTGCAGCTGTCCCAGAGCAGGGACACTGTCACTGACCTAGAAGGAAGTCCTTGGAGTGCAAGTGAACCCAGCATTGAGCCTGAGGGACTGAGCAATGCCGGCACAGAGGAAAACTACCACAGAAACATGTCGTGGCTTCACGTCATGATCTTACTCTGCAATCAACAAAGTTTCATTTGTACACATGTGGACTACTGCCATCCACACTGCTACCTGCACCACAGCCGCTCCTGTGCCCGGCTGGTCAGGGCCATTAAATTGCTGTATGGGGACAGTGTGGACTCCCTGCGTGAGAGCAACCACATCAGCAACGTGGCTCTGAGGGGCAAGAAACAGAAAGAGTGCTCAGATAAGTCATGCCTGAGGACACCTTCCCTGAAGAAGAGAGTTTCGGATGTCAACCTGGAAGGAAAAAAGGACTCGGGAATGCTGAAGTACATCAGGTTTCAGGGCCTCACTTGTGATACCACCATGCCAGAGGTCACGCTATGCCACCTACTTCGATGTTGCCGTTCTCCGCTGCCTTCTCCAGCCCCACTGGTCTGA
Peptide sequence:
MYYLQRLRHMLEEKPEKTPDPDIPLLPRPRSSSMVAAAPSLVNTHKTQDLTMKCNEEEKSLSPEAFSKVSLTNLRRSAVPDLSSDLGMNIFKKFKSRKEDRERKGSIPFHHTGKRRPRRMGVPFLLHEDHLDVSPTRSTFSFGSFSGLGEDRRGIEKGGWQTTILGKLTRRGSSDAATEMESLSARHSHSHHTLVSDLPDHSNSHGENTVKEVRSQISTITVATFNTTLASFNVGYADFFSEHMRKLCSQVPIPEMPHEPLACANLPRSLTDSCINYSYLEDTEHIDGTNNFVHKNGMLDLSVVLKAVYLVLNHDISSRICDVALNIVECLLQLGVVPCVEKNRKKSENKENESVEKRPSEGAFQFKGVSSSSTSGFGAPSASGAGDGGGEEGGGGDGGGGGGGGDGGGGGGGGGGPYEKNEKNQEKDDNIPVSNHRLALTMLIKIVKSLGCAYGCGEGHRGLSGDRLRHQVFRENAQNCLTKLYKLDKIQFRQTMRDYVNKDSLNNVVDFLHALLGFCMEPVTDNKAGFGNNFTTVDNKSTAQNVEGIIVGAMFKSLITRCASTTHELHSPENLGLYCDIRQLVQFIKEAHGNVFRRVALSALLDSAEKLAPGKKVEENGQESKPVGSKRSEAGSIADKGQVSSAPEECRSFMSGRPSQTPEHDEPMQGGNLGRKDFWRKMFKSQSAASDTSSQSEQDTSECTTAHSGNTSDRRARSRSRRISLRKKLKLPIGNWLKRSSLSGLADGVEDLLDISSVDRLSFIRQSSKVKFTSAVKLSEGGPGSGMENGREEEENFFKRLGCHSFDDHLSPNQDGGKSKNVVNLGAIRQGMKRFQFLLNCCEPGTIPDASILAAALDLEAPVVARAALFLECARFVHRCNRGNWPEWMKGHHVNITKKGLSRGRSPTVGNKRNQKLQWSAAKLFYQWGDAIGIRLNELCHGESESPANLLGLIYDEETKRRLRKEDEEEDFLDDSTVNPSKCGCPFALKMAACQLLLEITTFLRETFSCLPRPRTEPLVDLESCRLRLDPELDRHRYERKISFAGVLDENEDSKDSLHSSSHTIKSDAGAEEKKVPSRKIRIGGSRLLQIKGTRSFQVKKGGSLSSIRRVGSLKSSKLSRQDSESEAEELQLSQSRDTVTDLEGSPWSASEPSIEPEGLSNAGTEENYHRNMSWLHVMILLCNQQSFICTHVDYCHPHCYLHHSRSCARLVRAIKLLYGDSVDSLRESNHISNVALRGKKQKECSDKSCLRTPSLKKRVSDVNLEGKKDSGMLKYIRFQGLTCDTTMPEVTLCHLLRCCRSPLPSPAPLV
IRESfinder result
IRESfinder score
0.441717848
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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