top of page
mmu_circUnc79_2046
Basic information of circular RNA
PanCircBase ID:
mmu_circUnc79_2046
mm39_Chr. Position ID:
chr12|103070867|103094571|+
Gene name:
Unc79
Transcript:
ENSMUST00000101099.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
27,28,29,30,31,32
Exon/intron offsets:
0,3507,4007,7413,17727,23620
Genomic length:
23704
Exon/intron sizes in nt:
287,183,163,1221,108,84
Flanking exon/introns:
chr12:103061396-103070867|chr12:103094571-103097814
Splice length:
2046
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GACAACAGTCTCCAGAAAACGACAACACCATCAAGGACCTGCTCCCAGAAGATGCTGGCATTGATCACCAGACCGTTCACCAGCTGATCACAGTGCTCATGAAGTTCATGGCCAGGGATGAAAGCAGTGCGGAGTCAGATATCAGCAGCGCAAAGGCCTTCAACACAGTCAAGAGGCACCTCTATGTTTTACTTGGCTATGACCAGCAGGAAGGATGCTTCATGATCGCACCCCAAAAAATGCGCCTGTCAACATGCTTTAATGCATTTATTGCAGGAATTGCCCAAGTTATGGACTATAACATTAACTTGGGCAAACACCTTCTCCCCCTCGTGGTTCAGGTGCTCAAATACTGCTCTTGTCCTCAACTCCGGCATTATTTCCAACAGCCACCTCGCTGCTCCCTCTGGTCCCTAAAGCCTCACATCAGGCAGATGTGGTTGAAGGCCTTGCTCGTCATCCTTTACAAGTATCCGTACAGAGACTGTGATGTCAGCAAGACCCTGCTGCACCTGATTCACATAACAGTGAATACACTCAATGCGCAGTACCATAGCTGCAAGCCCCACGCCACGGCAGGACCGCTGTACACTGACAACAGCAACATAAGCAGATACAGCGAGAAGGAGAAAGGTGAAATAGAACTGGCCGAATATAGAGAAACGGGTGCGTTACAAGACAGCGTTCTACACTGTGTGAGAGAAGAAAGCATTCAGAAAAAAAAGCTACGCTCTTTAAAACAAAAATCTCTTGATATAGGGAATGCAGACTCCCTCTTGTTTACATTAGATGAGCATCGTAGGAAGTCCTGCATAGATCGATGTGACATAGATAAACCTCCTGCCCAAGCTGCTTATATCTCACAACGGCAAAACGACCACCATGGACGGTCTAGACAGAATTCTGCGACGAGGCCCGACAATACTGAAATCCCCAAGAATCCAGGCACCGAAGGTTTTCAAGAAATTCGAAGGCCGGTGATACCAGAGGTTAGGTTGAACTGCATGGAGACGTTTGAAGTGAGAGTTGATTCCCCAGGAAAGCCTGCTCCTAGGGAGGATTTAGATCTGATAGATCTGTCCTCAGACTCAACATCTGGGCCAGAGAAACACTCTATACTGTCCACATCCGACAGTGACTCTCTGGTGTTTGAGCCTCTCCCACCTCTCAGAATAGTCGAAAGTGATGAAGAAGAAGAGATGATGAACCAAGGGAATGGTGGTGCCTTGGGTAACAATGCTGCCTCCTCCCCCTCCATCCCCAGCCAGCCCTCTGTCCTCAGCCTGAGCACAACTCCTCTTGTGCAGGTGAGTGTAGAGGATTGCTCCAAAGACTTTTCTTCCAAGGACTCAGGAAACCACCAGTCGGCGAGCAATGAAGATTCTACTATCGCAGCTCTGGACGACCTCACGGACTCTGAAGAGCTGTCAAAGTCAGAGGAGCTGAGAGAGTTTGCCTCTGGCAGTCCGCTAACGCTCAAGCAAAAACGAGACCTCCTTCAGAAGTCGTCTGCCGTCCCTGAGATGTCAGTGGACTATAACCCCGAACCCAGCCCGGCTGAAGAAAAGCCAGGGCAGACGCCAACATCAGGGGTCAAAACTGTGCTCCTCAAAGTTCCCGAAGATGGTGAGAATCTTATAGAGAGCGAGAAACCCAACACCAGTGCCGAGTCTGACACAGAACAGAACCCTGAAAGGAAGGTAGAGGAGGATGGAGCCGAGGAATCAGAATTTAAGATTCAGATCGTCCCCAGGCAGAGGAAACAAAGGAAGATTGCCGTCAGCGCTATCCAGAGAGAGTACCTTGACATCTCCTTCAACATCCTAGACAAACTGGGTGAACAGAAGGACCCAGATCCCTCTGCTAAAGGACTTTCAACGTTGGAAATGCCACGGGAATCTTCCTCTGCCCCTACGTTAGAAGCAGGTGCCCCTGAAACCAGCAGTCACTCATCAATATCAAAACAGATACAGCCCGGGAAGCGGCAGTGTAACGTGCCAATGTGCCTAAACCCTGACCTGGAGGGACAGCCATTGAGGACAAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTGCCAATGTGCCTAAACC
60.11
GAGCACTGTGATCAGCTGGT
60.04
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGTGCCAATGTGCCTAAACC
60.11
TGAGCACTGTGATCAGCTGG
60.04
152
PCR template sequence:
CACTCATCAATATCAAAACAGATACAGCCCGGGAAGCGGCAGTGTAACGTGCCAATGTGCCTAAACCCTGACCTGGAGGGACAGCCATTGAGGACAAGAGGACAACAGTCTCCAGAAAACGACAACACCATCAAGGACCTGCTCCCAGAAGATGCTGGCATTGATCACCAGACCGTTCACCAGCTGATCACAGTGCTCAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(2), mmu-miR-134-5p(1), mmu-miR-200a-3p(1), mmu-miR-103-3p(1), mmu-miR-335-5p(1), mmu-miR-128-3p(1), mmu-miR-431-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-107-3p(1), mmu-miR-342-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-3105-3p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGAGGACAAGAGGACAACAGTCTCC
siRNA sets
CTGTTGTCCTCTTGTCCTC, ACTGTTGTCCTCTTGTCCT, TGTTGTCCTCTTGTCCTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUNC79_2046_ORF_1
0.9741
0.242591365
1
3993
ORF sequence:
ATGAAGTTCATGGCCAGGGATGAAAGCAGTGCGGAGTCAGATATCAGCAGCGCAAAGGCCTTCAACACAGTCAAGAGGCACCTCTATGTTTTACTTGGCTATGACCAGCAGGAAGGATGCTTCATGATCGCACCCCAAAAAATGCGCCTGTCAACATGCTTTAATGCATTTATTGCAGGAATTGCCCAAGTTATGGACTATAACATTAACTTGGGCAAACACCTTCTCCCCCTCGTGGTTCAGGTGCTCAAATACTGCTCTTGTCCTCAACTCCGGCATTATTTCCAACAGCCACCTCGCTGCTCCCTCTGGTCCCTAAAGCCTCACATCAGGCAGATGTGGTTGAAGGCCTTGCTCGTCATCCTTTACAAGTATCCGTACAGAGACTGTGATGTCAGCAAGACCCTGCTGCACCTGATTCACATAACAGTGAATACACTCAATGCGCAGTACCATAGCTGCAAGCCCCACGCCACGGCAGGACCGCTGTACACTGACAACAGCAACATAAGCAGATACAGCGAGAAGGAGAAAGGTGAAATAGAACTGGCCGAATATAGAGAAACGGGTGCGTTACAAGACAGCGTTCTACACTGTGTGAGAGAAGAAAGCATTCAGAAAAAAAAGCTACGCTCTTTAAAACAAAAATCTCTTGATATAGGGAATGCAGACTCCCTCTTGTTTACATTAGATGAGCATCGTAGGAAGTCCTGCATAGATCGATGTGACATAGATAAACCTCCTGCCCAAGCTGCTTATATCTCACAACGGCAAAACGACCACCATGGACGGTCTAGACAGAATTCTGCGACGAGGCCCGACAATACTGAAATCCCCAAGAATCCAGGCACCGAAGGTTTTCAAGAAATTCGAAGGCCGGTGATACCAGAGGTTAGGTTGAACTGCATGGAGACGTTTGAAGTGAGAGTTGATTCCCCAGGAAAGCCTGCTCCTAGGGAGGATTTAGATCTGATAGATCTGTCCTCAGACTCAACATCTGGGCCAGAGAAACACTCTATACTGTCCACATCCGACAGTGACTCTCTGGTGTTTGAGCCTCTCCCACCTCTCAGAATAGTCGAAAGTGATGAAGAAGAAGAGATGATGAACCAAGGGAATGGTGGTGCCTTGGGTAACAATGCTGCCTCCTCCCCCTCCATCCCCAGCCAGCCCTCTGTCCTCAGCCTGAGCACAACTCCTCTTGTGCAGGTGAGTGTAGAGGATTGCTCCAAAGACTTTTCTTCCAAGGACTCAGGAAACCACCAGTCGGCGAGCAATGAAGATTCTACTATCGCAGCTCTGGACGACCTCACGGACTCTGAAGAGCTGTCAAAGTCAGAGGAGCTGAGAGAGTTTGCCTCTGGCAGTCCGCTAACGCTCAAGCAAAAACGAGACCTCCTTCAGAAGTCGTCTGCCGTCCCTGAGATGTCAGTGGACTATAACCCCGAACCCAGCCCGGCTGAAGAAAAGCCAGGGCAGACGCCAACATCAGGGGTCAAAACTGTGCTCCTCAAAGTTCCCGAAGATGGTGAGAATCTTATAGAGAGCGAGAAACCCAACACCAGTGCCGAGTCTGACACAGAACAGAACCCTGAAAGGAAGGTAGAGGAGGATGGAGCCGAGGAATCAGAATTTAAGATTCAGATCGTCCCCAGGCAGAGGAAACAAAGGAAGATTGCCGTCAGCGCTATCCAGAGAGAGTACCTTGACATCTCCTTCAACATCCTAGACAAACTGGGTGAACAGAAGGACCCAGATCCCTCTGCTAAAGGACTTTCAACGTTGGAAATGCCACGGGAATCTTCCTCTGCCCCTACGTTAGAAGCAGGTGCCCCTGAAACCAGCAGTCACTCATCAATATCAAAACAGATACAGCCCGGGAAGCGGCAGTGTAACGTGCCAATGTGCCTAAACCCTGACCTGGAGGGACAGCCATTGAGGACAAGAGGACAACAGTCTCCAGAAAACGACAACACCATCAAGGACCTGCTCCCAGAAGATGCTGGCATTGATCACCAGACCGTTCACCAGCTGATCACAGTGCTCATGAAGTTCATGGCCAGGGATGAAAGCAGTGCGGAGTCAGATATCAGCAGCGCAAAGGCCTTCAACACAGTCAAGAGGCACCTCTATGTTTTACTTGGCTATGACCAGCAGGAAGGATGCTTCATGATCGCACCCCAAAAAATGCGCCTGTCAACATGCTTTAATGCATTTATTGCAGGAATTGCCCAAGTTATGGACTATAACATTAACTTGGGCAAACACCTTCTCCCCCTCGTGGTTCAGGTGCTCAAATACTGCTCTTGTCCTCAACTCCGGCATTATTTCCAACAGCCACCTCGCTGCTCCCTCTGGTCCCTAAAGCCTCACATCAGGCAGATGTGGTTGAAGGCCTTGCTCGTCATCCTTTACAAGTATCCGTACAGAGACTGTGATGTCAGCAAGACCCTGCTGCACCTGATTCACATAACAGTGAATACACTCAATGCGCAGTACCATAGCTGCAAGCCCCACGCCACGGCAGGACCGCTGTACACTGACAACAGCAACATAAGCAGATACAGCGAGAAGGAGAAAGGTGAAATAGAACTGGCCGAATATAGAGAAACGGGTGCGTTACAAGACAGCGTTCTACACTGTGTGAGAGAAGAAAGCATTCAGAAAAAAAAGCTACGCTCTTTAAAACAAAAATCTCTTGATATAGGGAATGCAGACTCCCTCTTGTTTACATTAGATGAGCATCGTAGGAAGTCCTGCATAGATCGATGTGACATAGATAAACCTCCTGCCCAAGCTGCTTATATCTCACAACGGCAAAACGACCACCATGGACGGTCTAGACAGAATTCTGCGACGAGGCCCGACAATACTGAAATCCCCAAGAATCCAGGCACCGAAGGTTTTCAAGAAATTCGAAGGCCGGTGATACCAGAGGTTAGGTTGAACTGCATGGAGACGTTTGAAGTGAGAGTTGATTCCCCAGGAAAGCCTGCTCCTAGGGAGGATTTAGATCTGATAGATCTGTCCTCAGACTCAACATCTGGGCCAGAGAAACACTCTATACTGTCCACATCCGACAGTGACTCTCTGGTGTTTGAGCCTCTCCCACCTCTCAGAATAGTCGAAAGTGATGAAGAAGAAGAGATGATGAACCAAGGGAATGGTGGTGCCTTGGGTAACAATGCTGCCTCCTCCCCCTCCATCCCCAGCCAGCCCTCTGTCCTCAGCCTGAGCACAACTCCTCTTGTGCAGGTGAGTGTAGAGGATTGCTCCAAAGACTTTTCTTCCAAGGACTCAGGAAACCACCAGTCGGCGAGCAATGAAGATTCTACTATCGCAGCTCTGGACGACCTCACGGACTCTGAAGAGCTGTCAAAGTCAGAGGAGCTGAGAGAGTTTGCCTCTGGCAGTCCGCTAACGCTCAAGCAAAAACGAGACCTCCTTCAGAAGTCGTCTGCCGTCCCTGAGATGTCAGTGGACTATAACCCCGAACCCAGCCCGGCTGAAGAAAAGCCAGGGCAGACGCCAACATCAGGGGTCAAAACTGTGCTCCTCAAAGTTCCCGAAGATGGTGAGAATCTTATAGAGAGCGAGAAACCCAACACCAGTGCCGAGTCTGACACAGAACAGAACCCTGAAAGGAAGGTAGAGGAGGATGGAGCCGAGGAATCAGAATTTAAGATTCAGATCGTCCCCAGGCAGAGGAAACAAAGGAAGATTGCCGTCAGCGCTATCCAGAGAGAGTACCTTGACATCTCCTTCAACATCCTAGACAAACTGGGTGAACAGAAGGACCCAGATCCCTCTGCTAAAGGACTTTCAACGTTGGAAATGCCACGGGAATCTTCCTCTGCCCCTACGTTAGAAGCAGGTGCCCCTGAAACCAGCAGTCACTCATCAATATCAAAACAGATACAGCCCGGGAAGCGGCAGTGTAACGTGCCAATGTGCCTAAACCCTGACCTGGAGGGACAGCCATTGAGGACAAGA
Peptide sequence:
MKFMARDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKTLLHLIHITVNTLNAQYHSCKPHATAGPLYTDNSNISRYSEKEKGEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYISQRQNDHHGRSRQNSATRPDNTEIPKNPGTEGFQEIRRPVIPEVRLNCMETFEVRVDSPGKPAPREDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEEEMMNQGNGGALGNNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSASNEDSTIAALDDLTDSEELSKSEELREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPEPSPAEEKPGQTPTSGVKTVLLKVPEDGENLIESEKPNTSAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNILDKLGEQKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETSSHSSISKQIQPGKRQCNVPMCLNPDLEGQPLRTRGQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMARDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKTLLHLIHITVNTLNAQYHSCKPHATAGPLYTDNSNISRYSEKEKGEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYISQRQNDHHGRSRQNSATRPDNTEIPKNPGTEGFQEIRRPVIPEVRLNCMETFEVRVDSPGKPAPREDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEEEMMNQGNGGALGNNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSASNEDSTIAALDDLTDSEELSKSEELREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPEPSPAEEKPGQTPTSGVKTVLLKVPEDGENLIESEKPNTSAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNILDKLGEQKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETSSHSSISKQIQPGKRQCNVPMCLNPDLEGQPLRTR
IRESfinder result
IRESfinder score
0.508776553
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page