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mmu_circUggt1_887
Basic information of circular RNA
PanCircBase ID:
mmu_circUggt1_887
mm39_Chr. Position ID:
chr1|36204589|36216697|-
Gene name:
Uggt1
Transcript:
ENSMUST00000046875.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
27,26,25,24,23,22,21,20
Exon/intron offsets:
0,4690,7926,8570,9387,10724,11267,12009
Genomic length:
12108
Exon/intron sizes in nt:
103,96,131,132,207,95,24,99
Flanking exon/introns:
chr1:36203604-36204589|chr1:36216697-36218639
Splice length:
887
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGGAATGTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGATAGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAAGTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGCTCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAGGCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGGTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGAAGCCCAAAGAAGGA
59.23
CCGAGAGTCCAAGGCAGAAA
59.68
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCTGAAGCCCAAAGAAGGA
59.85
CCGAGAGTCCAAGGCAGAAA
59.68
146
PCR template sequence:
AATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTGATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-92a-3p(1), mmu-miR-205-5p(1), mmu-miR-335-5p(1), mmu-miR-7a-5p(1), mmu-miR-196a-5p(1), mmu-miR-25-3p(1), mmu-miR-363-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-182-5p(1), mmu-miR-342-5p(1), mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCCCTTGCTCTTGATAATTTTTATGT
siRNA sets
ATAAAAATTATCAAGAGCA, CATAAAAATTATCAAGAGC, AAAATTATCAAGAGCAAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUGGT1_887_ORF_1
1.1484
0.248440092
0.986567604
891
ORF sequence:
ATGAACTATCTGACGAAAAAAGGAATGTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGATAGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAAGTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGCTCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAGGCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGGTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTGATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGA
Peptide sequence:
MNYLTKKGMSSKEIYDDSFIRPVTFWIVGDFDSPSGRQLLYDAIKHQKTSNNVRISMINNPSQEISDSSTPIFRAIWAALQTQASSSAKNFITKMAKEETAEALAAGVDIAEFSVGGMDVSLFKEVFESSRMDFILSHALYCRDVLKLKKGQRVVISNGRIIGPLEDNELFNQDDFHLLENIILKTSGQKIKSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHSAIKLKPKEGETYYDVVAVVDPVTREAQRLAPLLLIIFMWMTLPDFLPWTLGARRLLLPTV
IRESfinder result
IRESfinder score
0.530932423
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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