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mmu_circUggt1_1608
Basic information of circular RNA
PanCircBase ID:
mmu_circUggt1_1608
mm39_Chr. Position ID:
chr1|36199022|36218760|-
Gene name:
Uggt1
Transcript:
ENSMUST00000046875.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
14
Exon/intron indexes:
32,31,30,29,28,27,26,25,24,23,22,21,20,19
Exon/intron offsets:
0,1734,2263,3279,4502,5567,10257,13493,14137,14954,16291,16834,17576,19617
Genomic length:
19738
Exon/intron sizes in nt:
85,86,15,91,90,80,10,30,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:36197277-36199022|chr1:36218760-36221550
Splice length:
1608
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGGAATGTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGATAGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAAGTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGCTCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAGGCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGGTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTGGTTTTGACTCAGCTGATAAACATGAATCTAAGAGTATTTATGAATTGCCAATCCAAGCTTTCCGACATGCCTTTAAAAAGCTTTTACCGTTACGTCTTAGAGCCGGAGATTTCTTTCACTGCAGACAGCAGCTTTGCTAAGGGACCGATAGCAAAGTTTCTGGATATGCCACAGTCTCCGCTGTTTACTTTGAATCTGAACACACCTGAGAGTTGGATGGTAGAATCTGTCAGAACACCATATGATCTGGATAATATTTATCTAGAAGAGGTGGACAGTATAGTGGCTGCTGAGTATGAGCTGGAATATCTGTTACTAGAAGGTCATTGTTACGACATCACCACAGGCCAGCCCCCTCGAGGACTACAGTTCACTTTAGGAACTTCAGCCAACCCAACAATTGTGGACACAATTGTGATGGCCAATCTGGGATATTTTCAGCTCAAAGCCAATCCGGGAGCCTGGATTCTGAGACTGAGGAAGGGGCGCTCAGATGACATTTATAGGATCTACAGCCATGATGGTACAGATTCCCCTCCTGATGCAAACGACGTTGTTGTCATCCTCAATAACTTCAAGAGCAAGATCATCAAAGTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCCCTCCTGATGCAAACG
60.32
ACTCTCGCTTAGCTGTCAGA
58.17
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGATGCAAACGACGTTGT
59.41
ACTCTCGCTTAGCTGTCAGA
58.17
163
PCR template sequence:
TTATAGGATCTACAGCCATGATGGTACAGATTCCCCTCCTGATGCAAACGACGTTGTTGTCATCCTCAATAACTTCAAGAGCAAGATCATCAAAGTGAAGGGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(2), mmu-miR-182-5p(2), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-30e-5p(1), mmu-miR-92a-3p(1), mmu-miR-205-5p(1), mmu-miR-335-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-7a-5p(1), mmu-miR-196a-5p(1), mmu-miR-25-3p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-433-3p(1), mmu-miR-363-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-194-5p(1), mmu-miR-342-5p(1), mmu-miR-224-5p(1), mmu-miR-339-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CATCAAAGTGAAGGGTGAGCTGTCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUGGT1_1608_ORF_1
1.0958
0.253805477
0.999999999
3177
ORF sequence:
ATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGGAATGTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGATAGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAAGTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGCTCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAGGCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGGTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTGGTTTTGACTCAGCTGATAAACATGAATCTAAGAGTATTTATGAATTGCCAATCCAAGCTTTCCGACATGCCTTTAAAAAGCTTTTACCGTTACGTCTTAGAGCCGGAGATTTCTTTCACTGCAGACAGCAGCTTTGCTAAGGGACCGATAGCAAAGTTTCTGGATATGCCACAGTCTCCGCTGTTTACTTTGAATCTGAACACACCTGAGAGTTGGATGGTAGAATCTGTCAGAACACCATATGATCTGGATAATATTTATCTAGAAGAGGTGGACAGTATAGTGGCTGCTGAGTATGAGCTGGAATATCTGTTACTAGAAGGTCATTGTTACGACATCACCACAGGCCAGCCCCCTCGAGGACTACAGTTCACTTTAGGAACTTCAGCCAACCCAACAATTGTGGACACAATTGTGATGGCCAATCTGGGATATTTTCAGCTCAAAGCCAATCCGGGAGCCTGGATTCTGAGACTGAGGAAGGGGCGCTCAGATGACATTTATAGGATCTACAGCCATGATGGTACAGATTCCCCTCCTGATGCAAACGACGTTGTTGTCATCCTCAATAACTTCAAGAGCAAGATCATCAAAGTGAAGGGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATAATTTTTATGTGGATGACTTTGCCAGATTTTCTGCCTTGGACTCTCGGGGCAAGACGGCTGCTATTGCCAACAGTATGAACTATCTGACGAAAAAAGGAATGTCCTCCAAGGAAATCTATGATGATTCTTTTATTAGACCAGTGACTTTTTGGATTGTTGGAGATTTTGATAGCCCTTCTGGGCGGCAGCTACTATATGATGCCATTAAACATCAGAAAACCAGTAACAATGTTAGGATAAGTATGATCAACAATCCCAGCCAAGAGATCAGTGACTCAAGCACCCCCATCTTCAGAGCCATCTGGGCAGCTCTGCAAACACAGGCCTCCAGCTCTGCTAAGAACTTCATCACCAAGATGGCCAAAGAGGAGACGGCAGAGGCCCTGGCCGCAGGAGTGGACATTGCGGAATTCTCTGTCGGGGGCATGGATGTCAGTCTTTTTAAAGAGGTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTTCTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGATGATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAATAAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGTGGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGCGAGGATCGAGTACCAGTTCTTTGAGGATAAACACAGTGCAATTAAGCTGAAGCCCAAAGAAGGAGAGACATACTATGATGTGGTAGCCGTTGTTGACCCTGTCACACGAGAAGCACAGAGGCTCGCCCCCTTGCTCTTGGTTTTGACTCAGCTGATAAACATGAATCTAAGAGTATTTATGAATTGCCAATCCAAGCTTTCCGACATGCCTTTAAAAAGCTTTTACCGTTACGTCTTAGAGCCGGAGATTTCTTTCACTGCAGACAGCAGCTTTGCTAAGGGACCGATAGCAAAGTTTCTGGATATGCCACAGTCTCCGCTGTTTACTTTGAATCTGAACACACCTGAGAGTTGGATGGTAGAATCTGTCAGAACACCATATGATCTGGATAATATTTATCTAGAAGAGGTGGACAGTATAGTGGCTGCTGAGTATGAGCTGGAATATCTGTTACTAGAAGGTCATTGTTACGACATCACCACAGGCCAGCCCCCTCGAGGACTACAGTTCACTTTAGGAACTTCAGCCAACCCAACAATTGTGGACACAATTGTGATGGCCAATCTGGGATATTTTCAGCTCAAAGCCAATCCGGGAGCCTGGATTCTGAGACTGAGGAAGGGGCGCTCAGATGACATTTATAGGATCTACAGCCATGATGGTACAGATTCCCCTCCTGATGCAAACGACGTTGTTGTCATCCTCAATAACTTCAAGAGCAAGATCATCAAAGTGAAG
Peptide sequence:
MNQPNVVPRINSRILTAKREYLDLTASNNFYVDDFARFSALDSRGKTAAIANSMNYLTKKGMSSKEIYDDSFIRPVTFWIVGDFDSPSGRQLLYDAIKHQKTSNNVRISMINNPSQEISDSSTPIFRAIWAALQTQASSSAKNFITKMAKEETAEALAAGVDIAEFSVGGMDVSLFKEVFESSRMDFILSHALYCRDVLKLKKGQRVVISNGRIIGPLEDNELFNQDDFHLLENIILKTSGQKIKSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHSAIKLKPKEGETYYDVVAVVDPVTREAQRLAPLLLVLTQLINMNLRVFMNCQSKLSDMPLKSFYRYVLEPEISFTADSSFAKGPIAKFLDMPQSPLFTLNLNTPESWMVESVRTPYDLDNIYLEEVDSIVAAEYELEYLLLEGHCYDITTGQPPRGLQFTLGTSANPTIVDTIVMANLGYFQLKANPGAWILRLRKGRSDDIYRIYSHDGTDSPPDANDVVVILNNFKSKIIKVKGELSHDQDVVEYIMNQPNVVPRINSRILTAKREYLDLTASNNFYVDDFARFSALDSRGKTAAIANSMNYLTKKGMSSKEIYDDSFIRPVTFWIVGDFDSPSGRQLLYDAIKHQKTSNNVRISMINNPSQEISDSSTPIFRAIWAALQTQASSSAKNFITKMAKEETAEALAAGVDIAEFSVGGMDVSLFKEVFESSRMDFILSHALYCRDVLKLKKGQRVVISNGRIIGPLEDNELFNQDDFHLLENIILKTSGQKIKSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHSAIKLKPKEGETYYDVVAVVDPVTREAQRLAPLLLVLTQLINMNLRVFMNCQSKLSDMPLKSFYRYVLEPEISFTADSSFAKGPIAKFLDMPQSPLFTLNLNTPESWMVESVRTPYDLDNIYLEEVDSIVAAEYELEYLLLEGHCYDITTGQPPRGLQFTLGTSANPTIVDTIVMANLGYFQLKANPGAWILRLRKGRSDDIYRIYSHDGTDSPPDANDVVVILNNFKSKIIKVK
IRESfinder result
IRESfinder score
0.547868643
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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