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mmu_circUggt1_1164
Basic information of circular RNA
PanCircBase ID:
mmu_circUggt1_1164
mm39_Chr. Position ID:
chr1|36218639|36241959|-
Gene name:
Uggt1
Transcript:
ENSMUST00000046875.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
19,18,17,16,15,14,13,12,11,10
Exon/intron offsets:
0,2911,4797,6274,11970,12827,16291,17985,22146,23220
Genomic length:
23320
Exon/intron sizes in nt:
12,11,65,13,21,36,86,10,00,00,00,00,000
Flanking exon/introns:
chr1:36216697-36218639|chr1:36241959-36247022
Splice length:
1164
Other database IDs:
CIRCpedia: MMU_CIRCpedia_18049, circAtlas: mmu-Uggt1_0059
Human Ortholog IDs:
Mature spliced Sequence:
ATCTCAGCTTCCAGACTGCTGCCCGAATCTTGGCTGCTTCTGGGGCATTATCTCTGGTGGTGATGAAGGACATTAGTCAGAACTTTCCTACCAAGGCCAGAGCAATAACGAAAACGGCTGTGAGCGCGCAGCTTAGAGCGGAAGTGGAAGAGAACCAGAAGTATTTCAAGGGAACTATAGGATTACAGCCTGGAGACTCAGCGCTCTTCATCAATGGACTTCATATCGATTTAGACACCCAGGATATATTCAGTCTATTTGATACATTGAGGAATGAAGCCCGTGTAATGGAGGGTCTGCACAGGCTGGGAATAGAAGGCCTTTCTCTACATAATATTTTGAAGCTGAACATCCAGCCCTCTGAGACTGACTACGCAGTAGACATCAGGAGTCCTGCTATTTCCTGGGTCAACAACCTAGAGGTCGATAGCCGATATAACTCATGGCCTTCAAGCTTACAGGAGTTACTCCGCCCCACGTTTCCTGGTGTCATACGGCAGATCAGAAAGAACCTGCATAACATGGTTTTCATTATCGATCCTGTACACGAGACCACAGCCGAGTTGATTAGCATCGCCGAGATGTTCCTCAGCAATCACATACCGCTAAGGATTGGTTTTATCTTTGTGGTCAATGACTCTGAAGATGTTGATGGGATGCAAGATGCTGGAGTCGCTGTTCTGAGAGCGTATAATTATGTGGCTCAGGAAGTGGATGGCTATCACGCCTTCCAGACTCTCACACAGATCTATAACAAGGTGAGGACTGGAGAGACAGTGAAAGTGGAGCACGTGGTCAGTGTCTTGGAGAAGAAGTACCCGTACGTGGAAGTGAATAGCATTCTGGGAATTGATTCTGCTTACGATCAGAATCGGAAGGAAGCAAGAGGCTACTATGAGCAGACTGGAGTAGGCCCCCTGCCTGTTGTCCTGTTCAATGGAATGCCCTTTGAAAAGGAGCAGTTAGACCCGGATGAGCTGGAAACCATCACAATGCACAAGATCTTGGAGACAACCACCTTCTTCCAAAGAGCTGTGTACTTGGGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGACAGCTAAGCGAGAGT
58.17
CTGGCCTTGGTAGGAAAGTTCT
59.96
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGACAGCTAAGCGAGAGT
58.17
TGGCCTTGGTAGGAAAGTTCT
58.94
140
PCR template sequence:
GATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATCTCAGCTTCCAGACTGCTGCCCGAATCTTGGCTGCTTCTGGGGCATTATCTCTGGTGGTGATGAAGGACATTAGTCAGAACTTTCCTACCAAGGCCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-205-5p(2), mmu-miR-33-5p(1), mmu-miR-433-3p(1), mmu-miR-192-5p(1), mmu-miR-384-3p(1), mmu-miR-673-5p(1), mmu-miR-544-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTAACAGCAAGCAATCTCAGCTTCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUGGT1_1164_ORF_1
1.2224
0.282646122
0.999999484
2265
ORF sequence:
ATGAAGGACATTAGTCAGAACTTTCCTACCAAGGCCAGAGCAATAACGAAAACGGCTGTGAGCGCGCAGCTTAGAGCGGAAGTGGAAGAGAACCAGAAGTATTTCAAGGGAACTATAGGATTACAGCCTGGAGACTCAGCGCTCTTCATCAATGGACTTCATATCGATTTAGACACCCAGGATATATTCAGTCTATTTGATACATTGAGGAATGAAGCCCGTGTAATGGAGGGTCTGCACAGGCTGGGAATAGAAGGCCTTTCTCTACATAATATTTTGAAGCTGAACATCCAGCCCTCTGAGACTGACTACGCAGTAGACATCAGGAGTCCTGCTATTTCCTGGGTCAACAACCTAGAGGTCGATAGCCGATATAACTCATGGCCTTCAAGCTTACAGGAGTTACTCCGCCCCACGTTTCCTGGTGTCATACGGCAGATCAGAAAGAACCTGCATAACATGGTTTTCATTATCGATCCTGTACACGAGACCACAGCCGAGTTGATTAGCATCGCCGAGATGTTCCTCAGCAATCACATACCGCTAAGGATTGGTTTTATCTTTGTGGTCAATGACTCTGAAGATGTTGATGGGATGCAAGATGCTGGAGTCGCTGTTCTGAGAGCGTATAATTATGTGGCTCAGGAAGTGGATGGCTATCACGCCTTCCAGACTCTCACACAGATCTATAACAAGGTGAGGACTGGAGAGACAGTGAAAGTGGAGCACGTGGTCAGTGTCTTGGAGAAGAAGTACCCGTACGTGGAAGTGAATAGCATTCTGGGAATTGATTCTGCTTACGATCAGAATCGGAAGGAAGCAAGAGGCTACTATGAGCAGACTGGAGTAGGCCCCCTGCCTGTTGTCCTGTTCAATGGAATGCCCTTTGAAAAGGAGCAGTTAGACCCGGATGAGCTGGAAACCATCACAATGCACAAGATCTTGGAGACAACCACCTTCTTCCAAAGAGCTGTGTACTTGGGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGCAATCTCAGCTTCCAGACTGCTGCCCGAATCTTGGCTGCTTCTGGGGCATTATCTCTGGTGGTGATGAAGGACATTAGTCAGAACTTTCCTACCAAGGCCAGAGCAATAACGAAAACGGCTGTGAGCGCGCAGCTTAGAGCGGAAGTGGAAGAGAACCAGAAGTATTTCAAGGGAACTATAGGATTACAGCCTGGAGACTCAGCGCTCTTCATCAATGGACTTCATATCGATTTAGACACCCAGGATATATTCAGTCTATTTGATACATTGAGGAATGAAGCCCGTGTAATGGAGGGTCTGCACAGGCTGGGAATAGAAGGCCTTTCTCTACATAATATTTTGAAGCTGAACATCCAGCCCTCTGAGACTGACTACGCAGTAGACATCAGGAGTCCTGCTATTTCCTGGGTCAACAACCTAGAGGTCGATAGCCGATATAACTCATGGCCTTCAAGCTTACAGGAGTTACTCCGCCCCACGTTTCCTGGTGTCATACGGCAGATCAGAAAGAACCTGCATAACATGGTTTTCATTATCGATCCTGTACACGAGACCACAGCCGAGTTGATTAGCATCGCCGAGATGTTCCTCAGCAATCACATACCGCTAAGGATTGGTTTTATCTTTGTGGTCAATGACTCTGAAGATGTTGATGGGATGCAAGATGCTGGAGTCGCTGTTCTGAGAGCGTATAATTATGTGGCTCAGGAAGTGGATGGCTATCACGCCTTCCAGACTCTCACACAGATCTATAACAAGGTGAGGACTGGAGAGACAGTGAAAGTGGAGCACGTGGTCAGTGTCTTGGAGAAGAAGTACCCGTACGTGGAAGTGAATAGCATTCTGGGAATTGATTCTGCTTACGATCAGAATCGGAAGGAAGCAAGAGGCTACTATGAGCAGACTGGAGTAGGCCCCCTGCCTGTTGTCCTGTTCAATGGAATGCCCTTTGAAAAGGAGCAGTTAGACCCGGATGAGCTGGAAACCATCACAATGCACAAGATCTTGGAGACAACCACCTTCTTCCAAAGAGCTGTGTACTTGGGTGAGCTGTCCCATGATCAAGATGTGGTAGAGTACATCATGAATCAGCCAAATGTTGTTCCAAGAATCAACTCTAGGATTCTGACAGCTAAGCGAGAGTATCTGGACCTAACAGCAAGC
Peptide sequence:
MKDISQNFPTKARAITKTAVSAQLRAEVEENQKYFKGTIGLQPGDSALFINGLHIDLDTQDIFSLFDTLRNEARVMEGLHRLGIEGLSLHNILKLNIQPSETDYAVDIRSPAISWVNNLEVDSRYNSWPSSLQELLRPTFPGVIRQIRKNLHNMVFIIDPVHETTAELISIAEMFLSNHIPLRIGFIFVVNDSEDVDGMQDAGVAVLRAYNYVAQEVDGYHAFQTLTQIYNKVRTGETVKVEHVVSVLEKKYPYVEVNSILGIDSAYDQNRKEARGYYEQTGVGPLPVVLFNGMPFEKEQLDPDELETITMHKILETTTFFQRAVYLGELSHDQDVVEYIMNQPNVVPRINSRILTAKREYLDLTASNLSFQTAARILAASGALSLVVMKDISQNFPTKARAITKTAVSAQLRAEVEENQKYFKGTIGLQPGDSALFINGLHIDLDTQDIFSLFDTLRNEARVMEGLHRLGIEGLSLHNILKLNIQPSETDYAVDIRSPAISWVNNLEVDSRYNSWPSSLQELLRPTFPGVIRQIRKNLHNMVFIIDPVHETTAELISIAEMFLSNHIPLRIGFIFVVNDSEDVDGMQDAGVAVLRAYNYVAQEVDGYHAFQTLTQIYNKVRTGETVKVEHVVSVLEKKYPYVEVNSILGIDSAYDQNRKEARGYYEQTGVGPLPVVLFNGMPFEKEQLDPDELETITMHKILETTTFFQRAVYLGELSHDQDVVEYIMNQPNVVPRINSRILTAKREYLDLTAS
IRESfinder result
IRESfinder score
0.503535617
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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