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mmu_circUbr3_3000
Basic information of circular RNA
PanCircBase ID:
mmu_circUbr3_3000
mm39_Chr. Position ID:
chr2|69744757|69803953|+
Gene name:
Ubr3
Transcript:
ENSMUST00000055758.16
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
22
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23
Exon/intron offsets:
0,2663,7831,8470,19975,21478,23670,29886,30600,34010,36929,37086,38327,39074,39229,39862,41551,45153,50960,55723,56646,58735
Genomic length:
59196
Exon/intron sizes in nt:
1,40,15,91,44,50,67,13,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:69728183-69744757|chr2:69803953-69808062
Splice length:
3000
Other database IDs:
circAtlas: mmu-Ubr3_0035
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
GTTTTGTAGAAGACATCAGATTAAATCAAGTTCAAATATTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTCATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAGCAGCTGATGCACCATCAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAAAATGGGAGGAGCCATGAGGTCTGTTCTTACTCAGGTGTTAACCAACCAGCAGAACTACAAAGACCTGACTGCGGGTCTTGGAGAAAATGCTTGTGCAAAGAAAAGTCACGAGAAGTACCTTATAGCTTTGAAGAGCTCCGGACTGACATATCCCGAGGATAAGCTGGTGTATGGGGTCCAGGAACCAGCTGCTGGTACTAGCACTCTGGCAGCTCAAGGTTTTGCAGGTGCTACTGGAACACTGGGGCAGATAGACTCTTCAGATGAGGAGGACCAGGATGGGAGTCAAGGCTTGGGCAAGAGAAAGAGGGTGAAGCTAAGCAGTGGCACCAAAGATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAAGATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAGGTTGCTTTTACAAAAACATTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCTGGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAGATGAAGAGAACAGTTTACATGTAGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCCCTTGTCAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCTCAGAGGTTTCTGGAGGATCACGGCCTGTTAGTTACATGGATGAACTTTGTGTCTTTCTTTCAAGGTATGAACTTGAACAAGCGAGAGCTCAATGAGCACGTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGTGGGGGCTTTTATCACATTGTAAAGTTAGGGAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCTTGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAGCCAGCTCCTAACCAAGTCACTTTCCACCTACCACTGCACCGCTACTATGCTATGTTTTTGAGTAAGGCTGTGAAATGTCAAGAACTAGATTTGGATTCACTTTTACCGGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAAGCTAGTCTTGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACCTATGTCCAGTCTCATTTCTGTAACTCCATGATTGACCCAGACATTTACTTACTACAGGTCTGTGCTTCTAGACTTGACCCAGACTACTTTATATCATCTGTCTTTGAAAGATTTAAGGTGGTGGACTTACTGACCATGGCTTCACAGCACCACAACATGGTGCTCGATGTGGAGCACGAGCGGTCGATGCTAGAGGGTGCTCTCACGTTCCTCGTGATTCTTTTGAGTCTTCGTTTACACCTAGGGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCCAGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTCATCCCAGAAAATCCCAACCCCAAAAGTGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATTTTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAGCTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACCGTTTACCGCCGAGACGTGCAGTCTGCAATGGACAGATACACAGCATTTTTAAAACAGAGTGGAAAATTCCCTGGCAATCCCTGGCCTCCGTATAAGAAAAGAACATCACTCCATCCCAGCTATAAAGGTCTTATGAGACTTCTGCACTGTAAAACTTTACACATCGTGCTCTTCACTCTGCTTTACAAGATTCTGATGGATCATCAAAATCTGTCTGAGCATGTGCTGTGCATGGTCTTGTACCTGATTGAGTTAGGCCTGGAGAACTCTGCTGACGATGACTCCGAGGAAGAGGTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAAAATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTTCCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACAAGCGCATCATTGAGGAGA
60.07
AGTCTTTGGGGACACAGGGA
60.4
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAAGCGCATCATTGAGGAGA
60.07
GTCTTTGGGGACACAGGGAA
59.52
158
PCR template sequence:
ACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAGGTTTTGTAGAAGACATCAGATTAAATCAAGTTCAAATATTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTCATTTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-532-5p(2), mmu-miR-20b-5p(1), mmu-miR-93-5p(1), mmu-miR-199a-5p(1), mmu-miR-375-3p(1), mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-122-5p(1), mmu-miR-204-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-326-3p(1), mmu-miR-125b-5p(1), mmu-miR-139-5p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-351-5p(1), mmu-miR-22-3p(1), mmu-miR-411-3p(1), mmu-miR-107-3p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACAAGGAGGAAAGGTTTTGTAGAAGA
siRNA sets
TCTTCTACAAAACCTTTCC, TTCTACAAAACCTTTCCTC, TCTACAAAACCTTTCCTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUBR3_3000_ORF_1
0.9529
0.09889179
1
5934
ORF sequence:
ATGATGTCTGAATTTGTTCTTCCAAGATTCATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAGCAGCTGATGCACCATCAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAAAATGGGAGGAGCCATGAGGTCTGTTCTTACTCAGGTGTTAACCAACCAGCAGAACTACAAAGACCTGACTGCGGGTCTTGGAGAAAATGCTTGTGCAAAGAAAAGTCACGAGAAGTACCTTATAGCTTTGAAGAGCTCCGGACTGACATATCCCGAGGATAAGCTGGTGTATGGGGTCCAGGAACCAGCTGCTGGTACTAGCACTCTGGCAGCTCAAGGTTTTGCAGGTGCTACTGGAACACTGGGGCAGATAGACTCTTCAGATGAGGAGGACCAGGATGGGAGTCAAGGCTTGGGCAAGAGAAAGAGGGTGAAGCTAAGCAGTGGCACCAAAGATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAAGATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAGGTTGCTTTTACAAAAACATTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCTGGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAGATGAAGAGAACAGTTTACATGTAGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCCCTTGTCAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCTCAGAGGTTTCTGGAGGATCACGGCCTGTTAGTTACATGGATGAACTTTGTGTCTTTCTTTCAAGGTATGAACTTGAACAAGCGAGAGCTCAATGAGCACGTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGTGGGGGCTTTTATCACATTGTAAAGTTAGGGAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCTTGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAGCCAGCTCCTAACCAAGTCACTTTCCACCTACCACTGCACCGCTACTATGCTATGTTTTTGAGTAAGGCTGTGAAATGTCAAGAACTAGATTTGGATTCACTTTTACCGGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAAGCTAGTCTTGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACCTATGTCCAGTCTCATTTCTGTAACTCCATGATTGACCCAGACATTTACTTACTACAGGTCTGTGCTTCTAGACTTGACCCAGACTACTTTATATCATCTGTCTTTGAAAGATTTAAGGTGGTGGACTTACTGACCATGGCTTCACAGCACCACAACATGGTGCTCGATGTGGAGCACGAGCGGTCGATGCTAGAGGGTGCTCTCACGTTCCTCGTGATTCTTTTGAGTCTTCGTTTACACCTAGGGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCCAGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTCATCCCAGAAAATCCCAACCCCAAAAGTGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATTTTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAGCTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACCGTTTACCGCCGAGACGTGCAGTCTGCAATGGACAGATACACAGCATTTTTAAAACAGAGTGGAAAATTCCCTGGCAATCCCTGGCCTCCGTATAAGAAAAGAACATCACTCCATCCCAGCTATAAAGGTCTTATGAGACTTCTGCACTGTAAAACTTTACACATCGTGCTCTTCACTCTGCTTTACAAGATTCTGATGGATCATCAAAATCTGTCTGAGCATGTGCTGTGCATGGTCTTGTACCTGATTGAGTTAGGCCTGGAGAACTCTGCTGACGATGACTCCGAGGAAGAGGTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAAAATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTTCCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAGGTTTTGTAGAAGACATCAGATTAAATCAAGTTCAAATATTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTCATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAGCAGCTGATGCACCATCAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAAAATGGGAGGAGCCATGAGGTCTGTTCTTACTCAGGTGTTAACCAACCAGCAGAACTACAAAGACCTGACTGCGGGTCTTGGAGAAAATGCTTGTGCAAAGAAAAGTCACGAGAAGTACCTTATAGCTTTGAAGAGCTCCGGACTGACATATCCCGAGGATAAGCTGGTGTATGGGGTCCAGGAACCAGCTGCTGGTACTAGCACTCTGGCAGCTCAAGGTTTTGCAGGTGCTACTGGAACACTGGGGCAGATAGACTCTTCAGATGAGGAGGACCAGGATGGGAGTCAAGGCTTGGGCAAGAGAAAGAGGGTGAAGCTAAGCAGTGGCACCAAAGATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAAGATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAGGTTGCTTTTACAAAAACATTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCTGGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAGATGAAGAGAACAGTTTACATGTAGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCCCTTGTCAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCTCAGAGGTTTCTGGAGGATCACGGCCTGTTAGTTACATGGATGAACTTTGTGTCTTTCTTTCAAGGTATGAACTTGAACAAGCGAGAGCTCAATGAGCACGTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGTGGGGGCTTTTATCACATTGTAAAGTTAGGGAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCTTGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAGCCAGCTCCTAACCAAGTCACTTTCCACCTACCACTGCACCGCTACTATGCTATGTTTTTGAGTAAGGCTGTGAAATGTCAAGAACTAGATTTGGATTCACTTTTACCGGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAAGCTAGTCTTGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACCTATGTCCAGTCTCATTTCTGTAACTCCATGATTGACCCAGACATTTACTTACTACAGGTCTGTGCTTCTAGACTTGACCCAGACTACTTTATATCATCTGTCTTTGAAAGATTTAAGGTGGTGGACTTACTGACCATGGCTTCACAGCACCACAACATGGTGCTCGATGTGGAGCACGAGCGGTCGATGCTAGAGGGTGCTCTCACGTTCCTCGTGATTCTTTTGAGTCTTCGTTTACACCTAGGGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCCAGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTCATCCCAGAAAATCCCAACCCCAAAAGTGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATTTTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAGCTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACCGTTTACCGCCGAGACGTGCAGTCTGCAATGGACAGATACACAGCATTTTTAAAACAGAGTGGAAAATTCCCTGGCAATCCCTGGCCTCCGTATAAGAAAAGAACATCACTCCATCCCAGCTATAAAGGTCTTATGAGACTTCTGCACTGTAAAACTTTACACATCGTGCTCTTCACTCTGCTTTACAAGATTCTGATGGATCATCAAAATCTGTCTGAGCATGTGCTGTGCATGGTCTTGTACCTGATTGAGTTAGGCCTGGAGAACTCTGCTGACGATGACTCCGAGGAAGAGGTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAAAATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTTCCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAA
Peptide sequence:
MMSEFVLPRFIFCLIQYLREGYNEPAADAPSEKDLNKVLQLLEPQISFLEDLTKMGGAMRSVLTQVLTNQQNYKDLTAGLGENACAKKSHEKYLIALKSSGLTYPEDKLVYGVQEPAAGTSTLAAQGFAGATGTLGQIDSSDEEDQDGSQGLGKRKRVKLSSGTKDQSIMDVLKHKSFLEELLFWTIKYEFPQKMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNEELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYWPLVSDFINILSHQSVAQRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYYAAFAAELEACAQPMWGLLSHCKVRETQEYTRNVVRYCLEALQDWFDAINFVDEPAPNQVTFHLPLHRYYAMFLSKAVKCQELDLDSLLPDQEMLMKLMIHPLQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASRLDPDYFISSVFERFKVVDLLTMASQHHNMVLDVEHERSMLEGALTFLVILLSLRLHLGMSDDDILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFRAPIFEPGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFPGNPWPPYKKRTSLHPSYKGLMRLLHCKTLHIVLFTLLYKILMDHQNLSEHVLCMVLYLIELGLENSADDDSEEEVSMGGPERCHDSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDPLASTSSDALDSLQNSGTAQVFSLVAERRKKFQEIINRSNSEANQVVRPKIPSKWSAPGSSPQLTTAILEIKESILSLLIKLHHKLSGKQNSYYPPWLDDIEVLIQPEIPKYNHGDGITAVERILLKAAVQSRMNKRIIEEICRKVTPPVPPKKITAAEKKTLDKEERFCRRHQIKSSSNIPCVPKDLLMMSEFVLPRFIFCLIQYLREGYNEPAADAPSEKDLNKVLQLLEPQISFLEDLTKMGGAMRSVLTQVLTNQQNYKDLTAGLGENACAKKSHEKYLIALKSSGLTYPEDKLVYGVQEPAAGTSTLAAQGFAGATGTLGQIDSSDEEDQDGSQGLGKRKRVKLSSGTKDQSIMDVLKHKSFLEELLFWTIKYEFPQKMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNEELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYWPLVSDFINILSHQSVAQRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYYAAFAAELEACAQPMWGLLSHCKVRETQEYTRNVVRYCLEALQDWFDAINFVDEPAPNQVTFHLPLHRYYAMFLSKAVKCQELDLDSLLPDQEMLMKLMIHPLQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASRLDPDYFISSVFERFKVVDLLTMASQHHNMVLDVEHERSMLEGALTFLVILLSLRLHLGMSDDDILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFRAPIFEPGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFPGNPWPPYKKRTSLHPSYKGLMRLLHCKTLHIVLFTLLYKILMDHQNLSEHVLCMVLYLIELGLENSADDDSEEEVSMGGPERCHDSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDPLASTSSDALDSLQNSGTAQVFSLVAERRKKFQEIINRSNSEANQVVRPKIPSKWSAPGSSPQLTTAILEIKESILSLLIKLHHKLSGKQNSYYPPWLDDIEVLIQPEIPKYNHGDGITAVERILLKAAVQSRMNKRIIEEICRKVTPPVPPKKITAAEKKTLDKEE
IRESfinder result
IRESfinder score
0.662588633
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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