top of page
mmu_circUbn1_1914
Basic information of circular RNA
PanCircBase ID:
mmu_circUbn1_1914
mm39_Chr. Position ID:
chr16|4888512|4895979|+
Gene name:
Ubn1
Transcript:
ENSMUST00000230703.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
8,9,10,11,12,13,14,15
Exon/intron offsets:
0,1405,1658,2360,2673,3673,3821,6243
Genomic length:
7467
Exon/intron sizes in nt:
7,11,30,11,91,29,14,75,00,00,000
Flanking exon/introns:
chr16:4882650-4888512|chr16:4895979-4899281
Splice length:
1914
Other database IDs:
CIRCpedia: MMU_CIRCpedia_218428, circAtlas: mmu-Ubn1_0007
CIRCpedia: HSA_CIRCpedia_17773
Human Ortholog IDs:
Mature spliced Sequence:
GCTGCCAGAGCTGCTGAGGGAGAGAGCAAACAGAAATTCTTCACTCAAGATATTAATGGCATCCTGCTGGACATAGAGGTGCAAACTCGGGAGCTGACTAGCCAAATCCGTTCTGGGGTGTTTGCCTATCTGGCTTCATTCCTGCCCTGCAGCAAGGATGCTCTAGTCAAGCGTGCTCGGAAACTTCACCTCTACGAACAGGGTGGGCGCCTGAAAGAGCCACTCCAGAAGCTCAAGGATGCCATAGGTAGGGCTATGCCTGAGCAGGTAGCCAAGTACCAGGATGAATGCCAAGCACACACACAGGCAAAGGTTGCTAAGATGCTGGAGGAAGAGAAAGACAAGGAGCAGAGAGAACGGATTTGTTCTGATGAAGAAGAGGATGAAGAAAAGGGGGGCCGGAGAATAATGGGGCCCCGGAAGAAATTCCAGTGGAATGATGAAATCAGGGAGCTTCTGTGCCAGGTGGTGAAGATCAAGCTGGAGAGCCGTGATCTGGAGAGGAACAGCAAGGCCCAGGCCTGGGAGGACTGTGTGAAAGCTTTTCTGGATGCTGAGGTCAAGCCTCTCTGGCCCAAAGGCTGGATGCAAGCCAGGACTCTATTTAAGGAGAGCCGACGAGGCCATGGACACCTGACATCACTTCTGGCCAAGAAGAAAGTAATAGCTCCCTCAAAAATCAAGATGAAGGAATCATCTGTTAAGCTTGACAAAAAAGTTTCTGTTCCATCAGGACAGCATGGTGGTCCCACTACTTTGCTCTCAGAACATCAGGGCGGAGGCCTGAACACTGGGGCAAACAGCAGGGAGCATCCATCCCAGGCAACTTGTGGCCTCACTGACTCTGTTTCTGTCACCCTGGAGGACTCCCTGGATGAAGACCTCGTCAGGAATCCAGCCTCCTCTGTTGATGCTGTGTCTAAGGAGCTGGCTACGTTGAACAGCAGAGCAGCCAACAGTTCCGAATTCACACTGCCTACACCCTCCAAAGCACCAACAGAAAAAGTTGGTGGTGTTTTGTGTACAGAAGAGAAACGGAACTTTGCAAAGCCCAGCTCTTCTGCACCACCCCCCACAAATGCTCTGCAATCACCTCTCAATTTTCTGGCTGAGCAGGCTCTAGCACTGGGGCAGTCCTCTCAGGAGAAAAAGCCAGAGGGTTCTGGCTTCAAAGAGCTATCCTGTCAGGGTCCCCTTAGCAAGGGTGTGCCTGAATTACACCCGTCCAAAGCAAAGCACCACAATTTGCCACGGACGTCTCATGGACCCCAGGCAGCAGCTCCTGTGCCTGGACCCCAAGTCAAAGTCTTTCATGCAGGCACTCAACAGCAGAAAAGCTTCACACCCCCATCCCCATTTGTCAACAAGCTGCAAGGCCCAAAGGCCACCTCTCCACAGTGTCATCGGTCCCTTCTGCAGCTGGTAAAGACAGCAGCCAAAGGCCAGGCATTCCATGCCACTATGCCAGCCTCCTCTGGAAGTTCACCAGCCTCCAGCAGCAGTGCCCATAAGACGACAGCCTCAAACTCTACCACCATCAGCCATCCAGCCAAGCTGCACCCCACCAGCTCTGTGGGGCCGTCTTATAAGAATAACCCCTTCGCTGGCTCAGTCTCTAAACATGGGGCTTCTTCTAGCAGCCCATCGCCCGGAGGAGGAGCCCAAGTGCAGAGCTCTGTTTCTGGGGCCTCGCTCCCGGGGGTGCAGTCTCCCTCAGCAGGACAGTCTGCTAGCCGAGCTGCCCCAAGTTCTGCTGTGAAAAAAACACCTGTTACTCAGAAGCTGACCCTTGTAGCTCCACCTGGAGGTCCAAATGGAGATTCTGGTGGTGGGACCCAGGGAGTGGCAAAATTACTGACTTCCTCCCTGAAGCCTGCTGCAGTTAGTAGTGTGACATCGTCTACCTCCTTGCCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGACTTCCTCCCTGAAGCCT
60.18
GCACCTCTATGTCCAGCAGG
60.18
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCAGGGAGTGGCAAAATT
59.81
GCACCTCTATGTCCAGCAGG
60.18
163
PCR template sequence:
TGGAGATTCTGGTGGTGGGACCCAGGGAGTGGCAAAATTACTGACTTCCTCCCTGAAGCCTGCTGCAGTTAGTAGTGTGACATCGTCTACCTCCTTGCCAGCTGCCAGAGCTGCTGAGGGAGAGAGCAAACAGAAATTCTTCACTCAAGATATTAATGGCATCCTGCTGGACATAGAGGTGCAAACTCGGGAGCTGACTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
33
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-miR-199a-5p(1), mmu-miR-7b-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-30e-5p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-miR-30a-5p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-138-5p(1), mmu-miR-381-3p(1), mmu-miR-30d-5p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-136-5p(1), mmu-miR-676-3p(1), mmu-miR-127-5p(1), mmu-miR-218-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-362-5p(1), mmu-miR-324-3p(1), mmu-miR-34b-5p(1), mmu-miR-342-5p(1), mmu-miR-98-5p(1), mmu-miR-1187(1), mmu-miR-670-5p(1), mmu-miR-376a-3p(1), mmu-miR-338-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TACCTCCTTGCCAGCTGCCAGAGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCUBN1_1914_ORF_1
1.015
0.209634578
1
3573
ORF sequence:
ATGCCTGAGCAGGTAGCCAAGTACCAGGATGAATGCCAAGCACACACACAGGCAAAGGTTGCTAAGATGCTGGAGGAAGAGAAAGACAAGGAGCAGAGAGAACGGATTTGTTCTGATGAAGAAGAGGATGAAGAAAAGGGGGGCCGGAGAATAATGGGGCCCCGGAAGAAATTCCAGTGGAATGATGAAATCAGGGAGCTTCTGTGCCAGGTGGTGAAGATCAAGCTGGAGAGCCGTGATCTGGAGAGGAACAGCAAGGCCCAGGCCTGGGAGGACTGTGTGAAAGCTTTTCTGGATGCTGAGGTCAAGCCTCTCTGGCCCAAAGGCTGGATGCAAGCCAGGACTCTATTTAAGGAGAGCCGACGAGGCCATGGACACCTGACATCACTTCTGGCCAAGAAGAAAGTAATAGCTCCCTCAAAAATCAAGATGAAGGAATCATCTGTTAAGCTTGACAAAAAAGTTTCTGTTCCATCAGGACAGCATGGTGGTCCCACTACTTTGCTCTCAGAACATCAGGGCGGAGGCCTGAACACTGGGGCAAACAGCAGGGAGCATCCATCCCAGGCAACTTGTGGCCTCACTGACTCTGTTTCTGTCACCCTGGAGGACTCCCTGGATGAAGACCTCGTCAGGAATCCAGCCTCCTCTGTTGATGCTGTGTCTAAGGAGCTGGCTACGTTGAACAGCAGAGCAGCCAACAGTTCCGAATTCACACTGCCTACACCCTCCAAAGCACCAACAGAAAAAGTTGGTGGTGTTTTGTGTACAGAAGAGAAACGGAACTTTGCAAAGCCCAGCTCTTCTGCACCACCCCCCACAAATGCTCTGCAATCACCTCTCAATTTTCTGGCTGAGCAGGCTCTAGCACTGGGGCAGTCCTCTCAGGAGAAAAAGCCAGAGGGTTCTGGCTTCAAAGAGCTATCCTGTCAGGGTCCCCTTAGCAAGGGTGTGCCTGAATTACACCCGTCCAAAGCAAAGCACCACAATTTGCCACGGACGTCTCATGGACCCCAGGCAGCAGCTCCTGTGCCTGGACCCCAAGTCAAAGTCTTTCATGCAGGCACTCAACAGCAGAAAAGCTTCACACCCCCATCCCCATTTGTCAACAAGCTGCAAGGCCCAAAGGCCACCTCTCCACAGTGTCATCGGTCCCTTCTGCAGCTGGTAAAGACAGCAGCCAAAGGCCAGGCATTCCATGCCACTATGCCAGCCTCCTCTGGAAGTTCACCAGCCTCCAGCAGCAGTGCCCATAAGACGACAGCCTCAAACTCTACCACCATCAGCCATCCAGCCAAGCTGCACCCCACCAGCTCTGTGGGGCCGTCTTATAAGAATAACCCCTTCGCTGGCTCAGTCTCTAAACATGGGGCTTCTTCTAGCAGCCCATCGCCCGGAGGAGGAGCCCAAGTGCAGAGCTCTGTTTCTGGGGCCTCGCTCCCGGGGGTGCAGTCTCCCTCAGCAGGACAGTCTGCTAGCCGAGCTGCCCCAAGTTCTGCTGTGAAAAAAACACCTGTTACTCAGAAGCTGACCCTTGTAGCTCCACCTGGAGGTCCAAATGGAGATTCTGGTGGTGGGACCCAGGGAGTGGCAAAATTACTGACTTCCTCCCTGAAGCCTGCTGCAGTTAGTAGTGTGACATCGTCTACCTCCTTGCCAGCTGCCAGAGCTGCTGAGGGAGAGAGCAAACAGAAATTCTTCACTCAAGATATTAATGGCATCCTGCTGGACATAGAGGTGCAAACTCGGGAGCTGACTAGCCAAATCCGTTCTGGGGTGTTTGCCTATCTGGCTTCATTCCTGCCCTGCAGCAAGGATGCTCTAGTCAAGCGTGCTCGGAAACTTCACCTCTACGAACAGGGTGGGCGCCTGAAAGAGCCACTCCAGAAGCTCAAGGATGCCATAGGTAGGGCTATGCCTGAGCAGGTAGCCAAGTACCAGGATGAATGCCAAGCACACACACAGGCAAAGGTTGCTAAGATGCTGGAGGAAGAGAAAGACAAGGAGCAGAGAGAACGGATTTGTTCTGATGAAGAAGAGGATGAAGAAAAGGGGGGCCGGAGAATAATGGGGCCCCGGAAGAAATTCCAGTGGAATGATGAAATCAGGGAGCTTCTGTGCCAGGTGGTGAAGATCAAGCTGGAGAGCCGTGATCTGGAGAGGAACAGCAAGGCCCAGGCCTGGGAGGACTGTGTGAAAGCTTTTCTGGATGCTGAGGTCAAGCCTCTCTGGCCCAAAGGCTGGATGCAAGCCAGGACTCTATTTAAGGAGAGCCGACGAGGCCATGGACACCTGACATCACTTCTGGCCAAGAAGAAAGTAATAGCTCCCTCAAAAATCAAGATGAAGGAATCATCTGTTAAGCTTGACAAAAAAGTTTCTGTTCCATCAGGACAGCATGGTGGTCCCACTACTTTGCTCTCAGAACATCAGGGCGGAGGCCTGAACACTGGGGCAAACAGCAGGGAGCATCCATCCCAGGCAACTTGTGGCCTCACTGACTCTGTTTCTGTCACCCTGGAGGACTCCCTGGATGAAGACCTCGTCAGGAATCCAGCCTCCTCTGTTGATGCTGTGTCTAAGGAGCTGGCTACGTTGAACAGCAGAGCAGCCAACAGTTCCGAATTCACACTGCCTACACCCTCCAAAGCACCAACAGAAAAAGTTGGTGGTGTTTTGTGTACAGAAGAGAAACGGAACTTTGCAAAGCCCAGCTCTTCTGCACCACCCCCCACAAATGCTCTGCAATCACCTCTCAATTTTCTGGCTGAGCAGGCTCTAGCACTGGGGCAGTCCTCTCAGGAGAAAAAGCCAGAGGGTTCTGGCTTCAAAGAGCTATCCTGTCAGGGTCCCCTTAGCAAGGGTGTGCCTGAATTACACCCGTCCAAAGCAAAGCACCACAATTTGCCACGGACGTCTCATGGACCCCAGGCAGCAGCTCCTGTGCCTGGACCCCAAGTCAAAGTCTTTCATGCAGGCACTCAACAGCAGAAAAGCTTCACACCCCCATCCCCATTTGTCAACAAGCTGCAAGGCCCAAAGGCCACCTCTCCACAGTGTCATCGGTCCCTTCTGCAGCTGGTAAAGACAGCAGCCAAAGGCCAGGCATTCCATGCCACTATGCCAGCCTCCTCTGGAAGTTCACCAGCCTCCAGCAGCAGTGCCCATAAGACGACAGCCTCAAACTCTACCACCATCAGCCATCCAGCCAAGCTGCACCCCACCAGCTCTGTGGGGCCGTCTTATAAGAATAACCCCTTCGCTGGCTCAGTCTCTAAACATGGGGCTTCTTCTAGCAGCCCATCGCCCGGAGGAGGAGCCCAAGTGCAGAGCTCTGTTTCTGGGGCCTCGCTCCCGGGGGTGCAGTCTCCCTCAGCAGGACAGTCTGCTAGCCGAGCTGCCCCAAGTTCTGCTGTGAAAAAAACACCTGTTACTCAGAAGCTGACCCTTGTAGCTCCACCTGGAGGTCCAAATGGAGATTCTGGTGGTGGGACCCAGGGAGTGGCAAAATTACTGACTTCCTCCCTGAAGCCTGCTGCAGTTAGTAGTGTGACATCGTCTACCTCCTTGCCA
Peptide sequence:
MPEQVAKYQDECQAHTQAKVAKMLEEEKDKEQRERICSDEEEDEEKGGRRIMGPRKKFQWNDEIRELLCQVVKIKLESRDLERNSKAQAWEDCVKAFLDAEVKPLWPKGWMQARTLFKESRRGHGHLTSLLAKKKVIAPSKIKMKESSVKLDKKVSVPSGQHGGPTTLLSEHQGGGLNTGANSREHPSQATCGLTDSVSVTLEDSLDEDLVRNPASSVDAVSKELATLNSRAANSSEFTLPTPSKAPTEKVGGVLCTEEKRNFAKPSSSAPPPTNALQSPLNFLAEQALALGQSSQEKKPEGSGFKELSCQGPLSKGVPELHPSKAKHHNLPRTSHGPQAAAPVPGPQVKVFHAGTQQQKSFTPPSPFVNKLQGPKATSPQCHRSLLQLVKTAAKGQAFHATMPASSGSSPASSSSAHKTTASNSTTISHPAKLHPTSSVGPSYKNNPFAGSVSKHGASSSSPSPGGGAQVQSSVSGASLPGVQSPSAGQSASRAAPSSAVKKTPVTQKLTLVAPPGGPNGDSGGGTQGVAKLLTSSLKPAAVSSVTSSTSLPAARAAEGESKQKFFTQDINGILLDIEVQTRELTSQIRSGVFAYLASFLPCSKDALVKRARKLHLYEQGGRLKEPLQKLKDAIGRAMPEQVAKYQDECQAHTQAKVAKMLEEEKDKEQRERICSDEEEDEEKGGRRIMGPRKKFQWNDEIRELLCQVVKIKLESRDLERNSKAQAWEDCVKAFLDAEVKPLWPKGWMQARTLFKESRRGHGHLTSLLAKKKVIAPSKIKMKESSVKLDKKVSVPSGQHGGPTTLLSEHQGGGLNTGANSREHPSQATCGLTDSVSVTLEDSLDEDLVRNPASSVDAVSKELATLNSRAANSSEFTLPTPSKAPTEKVGGVLCTEEKRNFAKPSSSAPPPTNALQSPLNFLAEQALALGQSSQEKKPEGSGFKELSCQGPLSKGVPELHPSKAKHHNLPRTSHGPQAAAPVPGPQVKVFHAGTQQQKSFTPPSPFVNKLQGPKATSPQCHRSLLQLVKTAAKGQAFHATMPASSGSSPASSSSAHKTTASNSTTISHPAKLHPTSSVGPSYKNNPFAGSVSKHGASSSSPSPGGGAQVQSSVSGASLPGVQSPSAGQSASRAAPSSAVKKTPVTQKLTLVAPPGGPNGDSGGGTQGVAKLLTSSLKPAAVSSVTSSTSLP
IRESfinder result
IRESfinder score
0.451777512
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page