top of page
mmu_circUbe2g1_401
Basic information of circular RNA
PanCircBase ID:
mmu_circUbe2g1_401
mm39_Chr. Position ID:
chr11|72563785|72570318|+
Gene name:
Ube2g1
Transcript:
ENSMUST00000021148.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
3,4,5
Exon/intron offsets:
0,4745,6409
Genomic length:
6533
Exon/intron sizes in nt:
9,81,79,124
Flanking exon/introns:
chr11:72553999-72563785|chr11:72570318-72574349
Splice length:
401
Other database IDs:
circAtlas: mmu-Ube2g1_0008
circBase: hsa_circ_0003239, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_20945
Human Ortholog IDs:
Mature spliced Sequence:
TGAAGGTGGTGTTTTTAAGGCTCATCTCACTTTCCCAAAAGATTATCCCCTCCGGCCTCCTAAAATGAAATTCATTACAGAGATTTGGCACCCAAATGTTGATAAAAATGGTGATGTTTGCATTTCTATTCTTCATGAGCCTGGGGAGGATAAATATGGTTATGAGAAGCCAGAGGAACGCTGGTTACCTATCCATACTGTGGAAACCATCATGATTAGTGTCATTTCTATGCTGGCAGATCCTAATGGAGACTCACCTGCAAATGTAGATGCTGCGAAAGAATGGAGGGAAGACAGAAACGGAGAATTTAAAAGGAAAGTTGCCCGCTGTGTAAGAAAAAGCCAAGAAACTGCTTTTGAGTGATGTTTATTCAATAGTTAGTAACTTCACTTATTTCAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTTGCCCGCTGTGTAAGAA
59.89
TTTGGGTGCCAAATCTCTGT
57.62
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGTTGCCCGCTGTGTAAGA
59.89
TTTGGGTGCCAAATCTCTGT
57.62
180
PCR template sequence:
GGAGAATTTAAAAGGAAAGTTGCCCGCTGTGTAAGAAAAAGCCAAGAAACTGCTTTTGAGTGATGTTTATTCAATAGTTAGTAACTTCACTTATTTCAGGTGAAGGTGGTGTTTTTAAGGCTCATCTCACTTTCCCAAAAGATTATCCCCTCCGGCCTCCTAAAATGAAATTCATTACAGAGATTTGGCACCCAAATGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-425-5p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CACTTATTTCAGGTGAAGGTGGTGTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.714477205
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page