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mmu_circUbe2d2a_184
Basic information of circular RNA
PanCircBase ID:
mmu_circUbe2d2a_184
mm39_Chr. Position ID:
chr18|35933004|35933268|+
Gene name:
Ube2d2a
Transcript:
ENSMUST00000170693.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,5
Exon/intron offsets:
0,158
Genomic length:
264
Exon/intron sizes in nt:
78,106
Flanking exon/introns:
chr18:35932925-35933004|chr18:35933268-35934326
Splice length:
184
Other database IDs:
circBase: hsa_circ_0074231, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_50485
Human Ortholog IDs:
Mature spliced Sequence:
AATGACAGCCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCGCCTAAGGTTGCATTTACAACAAGAATTTATCACCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACGGTCACAGTGGTCTCCA
60.18
TGCAACCTTAGGCGGTTTGA
60.18
123
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTACGGTCACAGTGGTCTCC
59.47
ACCTTAGGCGGTTTGAAGGG
59.96
120
PCR template sequence:
AAGAATTTATCACCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGAATGACAGCCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCGCCTAAGGTTGCATTTACAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACTATTTCAAAAGAATGACAGCCCCT
siRNA sets
TGTCATTCTTTTGAAATAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.818215646
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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