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mmu_circTtyh2_408
Basic information of circular RNA
PanCircBase ID:
mmu_circTtyh2_408
mm39_Chr. Position ID:
chr11|114600868|114602664|+
Gene name:
Ttyh2
Transcript:
ENSMUST00000045779.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
11,12,13
Exon/intron offsets:
0,768,1717
Genomic length:
1796
Exon/intron sizes in nt:
143,186,79
Flanking exon/introns:
chr11:114599687-114600868|chr11:114602664-114609954
Splice length:
408
Other database IDs:
circAtlas: mmu-Ttyh2_0005
Human Ortholog IDs:
Mature spliced Sequence:
GACTACCTAGACGCCCTCACTGGCATCTGCTATGATGGCATTGAGGGCCTGCTCTTCCTTGGTCTCTTCTCCCTCTTGGCTGCCCTGGCTTTCTCCACCCTGACCTGTGCCGGACCTCGTGCCTGGAAATACTTCATCAACAGGGACAGAGATTATGATGACATCGACGACGATGACCCTTTCAACCCCCAAGCTCGGCGCATCGCGGCCCATAACCCCACGAGGGGGCAACTGCACAGTTTCTGCAGCTACAGCAGCGGCCTTGGCAGCCAGTGCAGCCTTCAGCCTCCCTCCCAGACCATCTCCAATGCCCCAGTCTCTGAGTACATGAACCAGGCCATACTCTTTGGTGGGAACCCACGATACGAAAATGTGCCACTCATCGGGAGAGGTTCCCCTCCGCCCACA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCCCAGTCTCTGAGTACA
59.89
GAGACCAAGGAAGAGCAGGC
60.39
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCCCAGTCTCTGAGTACA
59.89
TGCCATCATAGCAGATGCCA
59.52
140
PCR template sequence:
TGCCCCAGTCTCTGAGTACATGAACCAGGCCATACTCTTTGGTGGGAACCCACGATACGAAAATGTGCCACTCATCGGGAGAGGTTCCCCTCCGCCCACAGACTACCTAGACGCCCTCACTGGCATCTGCTATGATGGCATTGAGGGCCTGCTCTTCCTTGGTCTCTTCTCCCTCTTGGCTGCCCTGGCTTTCTCCACCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCCTCCGCCCACAGACTACCTAGACG
siRNA sets
CTAGGTAGTCTGTGGGCGG, TCTAGGTAGTCTGTGGGCG, CGTCTAGGTAGTCTGTGGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTTYH2_408_ORF_1
1.0249
0.364182145
0.84044145
489
ORF sequence:
ATGAACCAGGCCATACTCTTTGGTGGGAACCCACGATACGAAAATGTGCCACTCATCGGGAGAGGTTCCCCTCCGCCCACAGACTACCTAGACGCCCTCACTGGCATCTGCTATGATGGCATTGAGGGCCTGCTCTTCCTTGGTCTCTTCTCCCTCTTGGCTGCCCTGGCTTTCTCCACCCTGACCTGTGCCGGACCTCGTGCCTGGAAATACTTCATCAACAGGGACAGAGATTATGATGACATCGACGACGATGACCCTTTCAACCCCCAAGCTCGGCGCATCGCGGCCCATAACCCCACGAGGGGGCAACTGCACAGTTTCTGCAGCTACAGCAGCGGCCTTGGCAGCCAGTGCAGCCTTCAGCCTCCCTCCCAGACCATCTCCAATGCCCCAGTCTCTGAGTACATGAACCAGGCCATACTCTTTGGTGGGAACCCACGATACGAAAATGTGCCACTCATCGGGAGAGGTTCCCCTCCGCCCACA
Peptide sequence:
MNQAILFGGNPRYENVPLIGRGSPPPTDYLDALTGICYDGIEGLLFLGLFSLLAALAFSTLTCAGPRAWKYFINRDRDYDDIDDDDPFNPQARRIAAHNPTRGQLHSFCSYSSGLGSQCSLQPPSQTISNAPVSEYMNQAILFGGNPRYENVPLIGRGSPPPT
IRESfinder result
IRESfinder score
0.431911706
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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