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mmu_circTtll7_636_2
Basic information of circular RNA
PanCircBase ID:
mmu_circTtll7_636_2
mm39_Chr. Position ID:
chr3|146645730|146653413|+
Gene name:
Ttll7
Transcript:
ENSMUST00000170055.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
15,16,17,18
Exon/intron offsets:
0,4030,5118,7602
Genomic length:
7683
Exon/intron sizes in nt:
202,218,135,81
Flanking exon/introns:
chr3:146640369-146645730|chr3:146653413-146667358
Splice length:
636
Other database IDs:
circAtlas: mmu-Ttll7_0004
circBase: hsa_circ_0114267, circAtlas: hsa-TTLL7_0003, CIRCpedia: HSA_CIRCpedia_125030
Human Ortholog IDs:
Mature spliced Sequence:
CCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGTGGCTTCATATTGGCTCA
57.63
GCTGCTGCTGCTGTCGTA
60.43
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGTGGCTTCATATTGGCTCA
57.63
GCTGCTGCTGCTGTCGTAG
61.45
140
PCR template sequence:
GGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAACCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
AAAACAACGGAAACCCCTGTGCTGCA
siRNA sets
TGCAGCACAGGGGTTTCCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTTLL7_636_2_ORF_1
0.8032
0.23837025
0.998144913
1260
ORF sequence:
ATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAACCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAA
Peptide sequence:
MPECAEVTKKQKYYGSSDSSYDSSSSSSNSELDENEKELCQKRLDQVPYSLKHTSHCKIIQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQVIPLARPTSASRSHSLNRASSYARHLPHGSDTGSTNTLVSYQWNESLRQLKTKEQEDDLTSQTLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKPLCCMPECAEVTKKQKYYGSSDSSYDSSSSSSNSELDENEKELCQKRLDQVPYSLKHTSHCKIIQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQVIPLARPTSASRSHSLNRASSYARHLPHGSDTGSTNTLVSYQWNESLRQLKTKEQEDDLTSQTLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRK
IRESfinder result
IRESfinder score
0.498516483
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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