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mmu_circTtll7_636_2

Basic information of circular RNA
PanCircBase ID:

mmu_circTtll7_636_2

mm39_Chr. Position ID:

chr3|146645730|146653413|+

Gene name:

Ttll7

Transcript:

ENSMUST00000170055.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

15,16,17,18

Exon/intron offsets:

0,4030,5118,7602

Genomic length:

7683

Exon/intron sizes in nt:

202,218,135,81

Flanking exon/introns:

chr3:146640369-146645730|chr3:146653413-146667358

Splice length:

636

Other database IDs:

circAtlas: mmu-Ttll7_0004

circBase: hsa_circ_0114267, circAtlas: hsa-TTLL7_0003, CIRCpedia: HSA_CIRCpedia_125030

Human Ortholog IDs:
Mature spliced Sequence:

CCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AAGTGGCTTCATATTGGCTCA

57.63

GCTGCTGCTGCTGTCGTA

60.43

140

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

AAGTGGCTTCATATTGGCTCA

57.63

GCTGCTGCTGCTGTCGTAG

61.45

140

PCR template sequence:

GGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAACCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-1904(1)

siRNAs for circular RNA silencing
Junction sequence

AAAACAACGGAAACCCCTGTGCTGCA

siRNA sets

TGCAGCACAGGGGTTTCCG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCTTLL7_636_2_ORF_1

0.8032

0.23837025

0.998144913

1260

ORF sequence:

ATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAACCCCTGTGCTGCATGCCAGAGTGTGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGCAGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCCTTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCGGTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTAGCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTCACGGCAGTGACACCGGCTCTACCAACACTCTGGTAAGCTATCAGTGGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGAAGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGACGCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAA

Peptide sequence:

MPECAEVTKKQKYYGSSDSSYDSSSSSSNSELDENEKELCQKRLDQVPYSLKHTSHCKIIQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQVIPLARPTSASRSHSLNRASSYARHLPHGSDTGSTNTLVSYQWNESLRQLKTKEQEDDLTSQTLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKPLCCMPECAEVTKKQKYYGSSDSSYDSSSSSSNSELDENEKELCQKRLDQVPYSLKHTSHCKIIQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQVIPLARPTSASRSHSLNRASSYARHLPHGSDTGSTNTLVSYQWNESLRQLKTKEQEDDLTSQTLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRK

IRESfinder result

IRESfinder score

0.498516483

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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