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mmu_circTtll5_1935
Basic information of circular RNA
PanCircBase ID:
mmu_circTtll5_1935
mm39_Chr. Position ID:
chr12|85945766|85986284|+
Gene name:
Ttll5
Transcript:
ENSMUST00000040179.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
16,17,18,19,20,21,22,23,24,25,26,27,28
Exon/intron offsets:
0,400,9800,13559,18682,19938,23965,26647,27809,30871,33732,34289,40333
Genomic length:
40518
Exon/intron sizes in nt:
114,92,63,39,158,307,121,147,104,128,84,393,185
Flanking exon/introns:
chr12:85938984-85945766|chr12:85986284-86003339
Splice length:
1935
Other database IDs:
circAtlas: mmu-Ttll5_0006
circAtlas: hsa-TTLL5_0004, CIRCpedia: HSA_CIRCpedia_121072
Human Ortholog IDs:
Mature spliced Sequence:
CGCACCCGTCCACTCTCTGCCAGTGATGCAGAAATGAAAAACCTTGTGGCCTCAGCCCGGGAGAAGGTACCGGGGAAGTTAGGCGGTTCTGTGCTTGGTCTGTCAATGGAGGAGATCAAAGTTCTCCGGAGGGTAAAGGAGGAGAATGATCGGAGAGGAGGGTTTATTCGCATATTTCCTACATCGGAGACATGGGAAATATATGGGTCCTACCTTGAACACAAAACCTCCATGAACTACATGCTGGCAACACGCCTATTCCAGGACAGAGGAAACCCCAGAAGGAGCTTGCTGACAGGAAGAGCACGAGTGAGCACGGAAGGAGCACCAGAGCTAAAGGTGGAGAGCATGAACTCCAAGGCCAAGCTGCATGCCGCTCTCTATGAGAGGAAGCTACTGTCTCTGGAGGTGCGAAAACGTAGACGACGGAGTGGCAGATTGAGGGCAATGAGGCCAAAATACCCAGTGATTGCCCAACCAGCTGAAATGAATATTAAAACCGAGACAGAGAGTGAAGAGGAGGAAGAAGTTGGATTAGACAATGACGATGAAGAGCAGGAAGCATCCCAGGAGGAGTCTGCAGGGTCTCTTGGAGAAAATCAAGCCAAGTACACACCTTCATTGACTGTTATAGTAGAAAATTCGCCCAGAGACAATGCAATGAAAGTTGCCGAGTGGACTAATAAAGGTGAACCGTGCTGCAAAATCGAGGCTCAGGAGCCAGAGTCTAAATTCAACCTGATGCAGATTCTCCAGGACAATGGCAATCTAAGCAAAGTACAGGCCCGGTTAGCATTCTCTGCCTATCTTCAGCATGTGCAAATCCGTCTGACAAAAGACAGTGGTGGTCAGACACTCAGTCCCAGCTGGGCTGCCAAAGAGGATGAACAGATGGAACTGGTGGTTCGTTTTCTCAAGCGAGCGTCAAGTAACCTCCAGCACTCGCTGAGGATGGTATTGCCTAGTCGGCGGTTGGCACTTCTGGAGCGCAGGAGAATCCTTGCCCACCAGCTAGGAGACTTTATCGGTGTGTACAACAAGGAAACAGAACAAATGGCTGAAAAGAAATCAAAGAAGAAACTTGAAGAAGAGGAAGAAGATGGGGTGAACGCAGAAAGCTTTCAGGAGTTTATTCGACAAGCAAGTGAGGCTGAACTGGAGGAGGTGTTGACTTTTTATACCCAAAAAAACAAGTCTGCCAGTGTCTTCCTGGGGACTCACTCGAAAAGCTCTAAGAACAGCAGTAGTTACTCTGATAGTGGGGCAAAAGGTGATCACCCTGAGACCATACAAGAAGTGAAAATAAAGCAACCCAAACAGCAACAGGCAACAGAAATCCACGCCGATAAATTATCTCGATTTACCACTTCATCAGGAAAAGAGGCGAAACTAGTGTATACCAATTGCTCTTCTTTCTGCAGTCCTGCTGCTGTTCTTCTGCAGAGACTCCCCAGCTCCCATCTGTCGTCCGTGATCACAACCTCTGCCCTCTCGGCAGGCCCTGGCCACCATGCTTCTCTATCTCAAATCCCTCCAGCTGTCCCCAGCCTGCCTCACCAGCCAGCACTGCTACTGAGCCCCGTTCCTGACAATGCCCCTCCCTCCATACACTCTGGAACCCAGAATGTAAGCCCTGCGGGGCTGCCACGCTGTCGATCCGGCAGCTACACCATTGGCCCCTTTTCCTCTTTCCAAAGTGCCGCACATATCTATAGCCAGAAACTGTCTCGTCCCTCCTCAGCAAAGGCAGCAGGGTCATGTCATCCACACAAGCATCATTCAGGAATTGCCAAAACACAAAAAGAGGGTGAAGATGTTTCATTAAACAGGAGGTACAACCAAAGTCTGGTTACGGCTGAACTCCAGCGGCTCGCGGAGAAGCAGGCAGCCAGGCAGTATTCTCCAGCCAGTCACATCAGTCTCCTCACTCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGCAGTATTCTCCAGCC
60.18
AGCACAGAACCGCCTAACTT
59.6
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGCAGTATTCTCCAGCC
60.18
AAGCACAGAACCGCCTAACT
59.6
143
PCR template sequence:
CAACCAAAGTCTGGTTACGGCTGAACTCCAGCGGCTCGCGGAGAAGCAGGCAGCCAGGCAGTATTCTCCAGCCAGTCACATCAGTCTCCTCACTCAGCAGCGCACCCGTCCACTCTCTGCCAGTGATGCAGAAATGAAAAACCTTGTGGCCTCAGCCCGGGAGAAGGTACCGGGGAAGTTAGGCGGTTCTGTGCTTGGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
20
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(2), mmu-miR-207(2), mmu-miR-134-5p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-146a-5p(1), mmu-miR-33-5p(1), mmu-miR-7a-5p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-149-5p(1), mmu-miR-22-3p(1), mmu-miR-182-5p(1), mmu-miR-541-5p(1), mmu-miR-190b-5p(1), mmu-miR-335-3p(1), mmu-miR-669d-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTCACTCAGCAGCGCACCCGTCCAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTTLL5_1935_ORF_1
0.8803
0.203775321
1
3837
ORF sequence:
ATGAAAAACCTTGTGGCCTCAGCCCGGGAGAAGGTACCGGGGAAGTTAGGCGGTTCTGTGCTTGGTCTGTCAATGGAGGAGATCAAAGTTCTCCGGAGGGTAAAGGAGGAGAATGATCGGAGAGGAGGGTTTATTCGCATATTTCCTACATCGGAGACATGGGAAATATATGGGTCCTACCTTGAACACAAAACCTCCATGAACTACATGCTGGCAACACGCCTATTCCAGGACAGAGGAAACCCCAGAAGGAGCTTGCTGACAGGAAGAGCACGAGTGAGCACGGAAGGAGCACCAGAGCTAAAGGTGGAGAGCATGAACTCCAAGGCCAAGCTGCATGCCGCTCTCTATGAGAGGAAGCTACTGTCTCTGGAGGTGCGAAAACGTAGACGACGGAGTGGCAGATTGAGGGCAATGAGGCCAAAATACCCAGTGATTGCCCAACCAGCTGAAATGAATATTAAAACCGAGACAGAGAGTGAAGAGGAGGAAGAAGTTGGATTAGACAATGACGATGAAGAGCAGGAAGCATCCCAGGAGGAGTCTGCAGGGTCTCTTGGAGAAAATCAAGCCAAGTACACACCTTCATTGACTGTTATAGTAGAAAATTCGCCCAGAGACAATGCAATGAAAGTTGCCGAGTGGACTAATAAAGGTGAACCGTGCTGCAAAATCGAGGCTCAGGAGCCAGAGTCTAAATTCAACCTGATGCAGATTCTCCAGGACAATGGCAATCTAAGCAAAGTACAGGCCCGGTTAGCATTCTCTGCCTATCTTCAGCATGTGCAAATCCGTCTGACAAAAGACAGTGGTGGTCAGACACTCAGTCCCAGCTGGGCTGCCAAAGAGGATGAACAGATGGAACTGGTGGTTCGTTTTCTCAAGCGAGCGTCAAGTAACCTCCAGCACTCGCTGAGGATGGTATTGCCTAGTCGGCGGTTGGCACTTCTGGAGCGCAGGAGAATCCTTGCCCACCAGCTAGGAGACTTTATCGGTGTGTACAACAAGGAAACAGAACAAATGGCTGAAAAGAAATCAAAGAAGAAACTTGAAGAAGAGGAAGAAGATGGGGTGAACGCAGAAAGCTTTCAGGAGTTTATTCGACAAGCAAGTGAGGCTGAACTGGAGGAGGTGTTGACTTTTTATACCCAAAAAAACAAGTCTGCCAGTGTCTTCCTGGGGACTCACTCGAAAAGCTCTAAGAACAGCAGTAGTTACTCTGATAGTGGGGCAAAAGGTGATCACCCTGAGACCATACAAGAAGTGAAAATAAAGCAACCCAAACAGCAACAGGCAACAGAAATCCACGCCGATAAATTATCTCGATTTACCACTTCATCAGGAAAAGAGGCGAAACTAGTGTATACCAATTGCTCTTCTTTCTGCAGTCCTGCTGCTGTTCTTCTGCAGAGACTCCCCAGCTCCCATCTGTCGTCCGTGATCACAACCTCTGCCCTCTCGGCAGGCCCTGGCCACCATGCTTCTCTATCTCAAATCCCTCCAGCTGTCCCCAGCCTGCCTCACCAGCCAGCACTGCTACTGAGCCCCGTTCCTGACAATGCCCCTCCCTCCATACACTCTGGAACCCAGAATGTAAGCCCTGCGGGGCTGCCACGCTGTCGATCCGGCAGCTACACCATTGGCCCCTTTTCCTCTTTCCAAAGTGCCGCACATATCTATAGCCAGAAACTGTCTCGTCCCTCCTCAGCAAAGGCAGCAGGGTCATGTCATCCACACAAGCATCATTCAGGAATTGCCAAAACACAAAAAGAGGGTGAAGATGTTTCATTAAACAGGAGGTACAACCAAAGTCTGGTTACGGCTGAACTCCAGCGGCTCGCGGAGAAGCAGGCAGCCAGGCAGTATTCTCCAGCCAGTCACATCAGTCTCCTCACTCAGCAGCGCACCCGTCCACTCTCTGCCAGTGATGCAGAAATGAAAAACCTTGTGGCCTCAGCCCGGGAGAAGGTACCGGGGAAGTTAGGCGGTTCTGTGCTTGGTCTGTCAATGGAGGAGATCAAAGTTCTCCGGAGGGTAAAGGAGGAGAATGATCGGAGAGGAGGGTTTATTCGCATATTTCCTACATCGGAGACATGGGAAATATATGGGTCCTACCTTGAACACAAAACCTCCATGAACTACATGCTGGCAACACGCCTATTCCAGGACAGAGGAAACCCCAGAAGGAGCTTGCTGACAGGAAGAGCACGAGTGAGCACGGAAGGAGCACCAGAGCTAAAGGTGGAGAGCATGAACTCCAAGGCCAAGCTGCATGCCGCTCTCTATGAGAGGAAGCTACTGTCTCTGGAGGTGCGAAAACGTAGACGACGGAGTGGCAGATTGAGGGCAATGAGGCCAAAATACCCAGTGATTGCCCAACCAGCTGAAATGAATATTAAAACCGAGACAGAGAGTGAAGAGGAGGAAGAAGTTGGATTAGACAATGACGATGAAGAGCAGGAAGCATCCCAGGAGGAGTCTGCAGGGTCTCTTGGAGAAAATCAAGCCAAGTACACACCTTCATTGACTGTTATAGTAGAAAATTCGCCCAGAGACAATGCAATGAAAGTTGCCGAGTGGACTAATAAAGGTGAACCGTGCTGCAAAATCGAGGCTCAGGAGCCAGAGTCTAAATTCAACCTGATGCAGATTCTCCAGGACAATGGCAATCTAAGCAAAGTACAGGCCCGGTTAGCATTCTCTGCCTATCTTCAGCATGTGCAAATCCGTCTGACAAAAGACAGTGGTGGTCAGACACTCAGTCCCAGCTGGGCTGCCAAAGAGGATGAACAGATGGAACTGGTGGTTCGTTTTCTCAAGCGAGCGTCAAGTAACCTCCAGCACTCGCTGAGGATGGTATTGCCTAGTCGGCGGTTGGCACTTCTGGAGCGCAGGAGAATCCTTGCCCACCAGCTAGGAGACTTTATCGGTGTGTACAACAAGGAAACAGAACAAATGGCTGAAAAGAAATCAAAGAAGAAACTTGAAGAAGAGGAAGAAGATGGGGTGAACGCAGAAAGCTTTCAGGAGTTTATTCGACAAGCAAGTGAGGCTGAACTGGAGGAGGTGTTGACTTTTTATACCCAAAAAAACAAGTCTGCCAGTGTCTTCCTGGGGACTCACTCGAAAAGCTCTAAGAACAGCAGTAGTTACTCTGATAGTGGGGCAAAAGGTGATCACCCTGAGACCATACAAGAAGTGAAAATAAAGCAACCCAAACAGCAACAGGCAACAGAAATCCACGCCGATAAATTATCTCGATTTACCACTTCATCAGGAAAAGAGGCGAAACTAGTGTATACCAATTGCTCTTCTTTCTGCAGTCCTGCTGCTGTTCTTCTGCAGAGACTCCCCAGCTCCCATCTGTCGTCCGTGATCACAACCTCTGCCCTCTCGGCAGGCCCTGGCCACCATGCTTCTCTATCTCAAATCCCTCCAGCTGTCCCCAGCCTGCCTCACCAGCCAGCACTGCTACTGAGCCCCGTTCCTGACAATGCCCCTCCCTCCATACACTCTGGAACCCAGAATGTAAGCCCTGCGGGGCTGCCACGCTGTCGATCCGGCAGCTACACCATTGGCCCCTTTTCCTCTTTCCAAAGTGCCGCACATATCTATAGCCAGAAACTGTCTCGTCCCTCCTCAGCAAAGGCAGCAGGGTCATGTCATCCACACAAGCATCATTCAGGAATTGCCAAAACACAAAAAGAGGGTGAAGATGTTTCATTAAACAGGAGGTACAACCAAAGTCTGGTTACGGCTGAACTCCAGCGGCTCGCGGAGAAGCAGGCAGCCAGGCAGTATTCTCCAGCCAGTCACATCAGTCTCCTCACTCAGCAG
Peptide sequence:
MKNLVASAREKVPGKLGGSVLGLSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIYGSYLEHKTSMNYMLATRLFQDRGNPRRSLLTGRARVSTEGAPELKVESMNSKAKLHAALYERKLLSLEVRKRRRRSGRLRAMRPKYPVIAQPAEMNIKTETESEEEEEVGLDNDDEEQEASQEESAGSLGENQAKYTPSLTVIVENSPRDNAMKVAEWTNKGEPCCKIEAQEPESKFNLMQILQDNGNLSKVQARLAFSAYLQHVQIRLTKDSGGQTLSPSWAAKEDEQMELVVRFLKRASSNLQHSLRMVLPSRRLALLERRRILAHQLGDFIGVYNKETEQMAEKKSKKKLEEEEEDGVNAESFQEFIRQASEAELEEVLTFYTQKNKSASVFLGTHSKSSKNSSSYSDSGAKGDHPETIQEVKIKQPKQQQATEIHADKLSRFTTSSGKEAKLVYTNCSSFCSPAAVLLQRLPSSHLSSVITTSALSAGPGHHASLSQIPPAVPSLPHQPALLLSPVPDNAPPSIHSGTQNVSPAGLPRCRSGSYTIGPFSSFQSAAHIYSQKLSRPSSAKAAGSCHPHKHHSGIAKTQKEGEDVSLNRRYNQSLVTAELQRLAEKQAARQYSPASHISLLTQQRTRPLSASDAEMKNLVASAREKVPGKLGGSVLGLSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIYGSYLEHKTSMNYMLATRLFQDRGNPRRSLLTGRARVSTEGAPELKVESMNSKAKLHAALYERKLLSLEVRKRRRRSGRLRAMRPKYPVIAQPAEMNIKTETESEEEEEVGLDNDDEEQEASQEESAGSLGENQAKYTPSLTVIVENSPRDNAMKVAEWTNKGEPCCKIEAQEPESKFNLMQILQDNGNLSKVQARLAFSAYLQHVQIRLTKDSGGQTLSPSWAAKEDEQMELVVRFLKRASSNLQHSLRMVLPSRRLALLERRRILAHQLGDFIGVYNKETEQMAEKKSKKKLEEEEEDGVNAESFQEFIRQASEAELEEVLTFYTQKNKSASVFLGTHSKSSKNSSSYSDSGAKGDHPETIQEVKIKQPKQQQATEIHADKLSRFTTSSGKEAKLVYTNCSSFCSPAAVLLQRLPSSHLSSVITTSALSAGPGHHASLSQIPPAVPSLPHQPALLLSPVPDNAPPSIHSGTQNVSPAGLPRCRSGSYTIGPFSSFQSAAHIYSQKLSRPSSAKAAGSCHPHKHHSGIAKTQKEGEDVSLNRRYNQSLVTAELQRLAEKQAARQYSPASHISLLTQQ
IRESfinder result
IRESfinder score
0.465533102
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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