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mmu_circTrpm2_2469
Basic information of circular RNA
PanCircBase ID:
mmu_circTrpm2_2469
mm39_Chr. Position ID:
chr10|77748411|77771849|-
Gene name:
Trpm2
Transcript:
ENSMUST00000105401.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14
Exon/intron offsets:
0,1227,2134,5129,5502,6287,7040,7867,10919,11404,13100,16635,17251,17958,19557,20996,22103,22467,23300
Genomic length:
23438
Exon/intron sizes in nt:
10,21,06,87,10,27,41,50,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr10:77747239-77748411|chr10:77771849-77773625
Splice length:
2469
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCAGGGAGTGAGCCTCCGGTCCCTCTATAAGCGATCAACAGGCCACGTTACCTTCACCATTGACCCAGTCCGTGACCTTCTCATTTGGGCCGTTATCCAGAACCACAGGGAGCTGGCAGGCATCATCTGGGCTCAGAGTCAGGACTGTACTGCCGCAGCACTGGCCTGTAGCAAGATCCTGAAGGAGCTGTCCAAGGAGGAGGAAGATACAGACAGCTCTGAGGAGATGCTGGCACTGGCAGACGAGTTTGAGCACAGAGCTATAGGCGTCTTCACTGAGTGCTACAGGAAGGATGAGGAAAGAGCCCAGAAGCTGCTTGTCCGTGTGTCTGAGGCCTGGGGGAAGACCACCTGCCTGCAGCTGGCCCTAGAGGCCAAGGACATGAAATTCGTGTCTCATGGAGGCATCCAGGCTTTCCTAACCAAGGTGTGGTGGGGCCAGCTCTGTGTGGACAATGGCCTGTGGAGGATCATCCTGTGCATGCTGGCCTTCCCGCTGCTCTTCACCGGCTTCATCTCCTTCAGGGAAAAGAGGCTGCAGGCACTGTGTCGCCCAGCCCGCGTCCGCGCCTTCTTCAATGCGCCTGTGGTCATCTTCCACATGAATATCCTCTCCTACTTTGCCTTCCTCTGCCTGTTCGCCTACGTGCTCATGGTGGACTTCCAGCCTTCTCCATCCTGGTGCGAGTACCTCATCTACCTGTGGCTCTTCTCCCTGGTGTGCGAAGAGACTCGGCAGCTATTCTATGATCCTGATGGCTGTGGACTAATGAAGATGGCGTCCCTGTACTTCAGTGACTTCTGGAACAAACTGGACGTTGGGGCCATTCTGCTCTTCATAGTAGGACTGACCTGTCGGCTCATCCCAGCGACGCTGTACCCTGGGCGCATCATCCTGTCTTTGGACTTCATCATGTTCTGTCTCCGTCTCATGCACATCTTCACTATTAGCAAGACACTGGGGCCCAAGATAATCATCGTGAAGCGGATGATGAAGGACGTCTTCTTCTTCCTCTTTCTCCTGGCGGTGTGGGTGGTGTCCTTCGGCGTAGCTAAGCAGGCCATTCTCATACATAACGAGAGCCGCGTGGACTGGATCTTCCGTGGGGTTGTCTATCACTCTTACCTGACCATCTTTGGCCAGATCCCAACCTACATTGACGGTGTGAATTTCAGCATGGACCAGTGCAGCCCCAATGGCACGGACCCCTACAAGCCTAAGTGTCCTGAGAGCGACTGGACGGGACAGGCACCTGCCTTCCCCGAGTGGCTGACTGTCACCCTGCTCTGCCTCTACCTGCTCTTTGCCAACATCCTGCTGCTTAACCTGCTCATCGCCATGTTCAACTACACCTTCCAGGAGGTGCAGGAACACACAGACCAGATCTGGAAATTCCAGCGCCACGACCTGATCGAGGAGTACCATGGCCGTCCCCCGGCACCTCCCCCACTCATCCTCCTCAGCCACCTGCAGCTCCTGATCAAGAGGATTGTCCTGAAGATCCCTGCCAAGAGGCATAAGCAGCTCAAGAACAAGCTGGAGAAGAACGAGGAGACAGCGCTCCTGTCTTGGGAACTGTACCTGAAGGAGAACTACCTGCAGAACCAGCAGTACCAGCAGAAACAGCGTCCAGAGCAGAAAATCCAAGACATCAGTGAGAAAGTGGACACCATGGTGGATCTGCTGGACATGGACCAGGTGAAGAGGTCAGGCTCCACAGAGCAGAGACTGGCTTCCCTGGAGGAACAGGTGACTCAGGTGACCAGAGCTTTGCACTGGATCGTGACAACCCTGAAGGACAGTGGCTTTGGCTCAGGAGCAGGTGCGCTGACCCTGGCACCCCAGAGGGCCTTCGATGAGCCAGATGCTGAGCTGAGTATCAGGAGGAAAGTAGAGGAACCAGGAGATGGTTACCACGTGAGCGCCCGGCATCTCCTCTATCCCAATGCCCGCATCATGCGCTTCCCCGTGCCTAACGAGAAGGTGCCTTGGGCGGCAGAGTTTCTGATCTACGATCCTCCCTTTTACACCGCTGAGAAGGATGTGGCTCTCACAGACCCCGTGGGAGACACTGCAGAACCTCTGTCTAAGATCAGTTACAACGTCGTGGATGGACCGACGGACCGTCGCAGCTTCCATGGAGTCTACGTGGTCGAGTATGGGTTCCCGTTGAACCCCATGGGCCGCACAGGGTTGCGTGGTCGTGGGAGCCTCAGCTGGTTTGGTCCCAACCACACTCTGCAGCCAGTTGTCACCCGGTGGAAGAGGAACCAGGGTGGAGCCATCTGCCGGAAGAGTGTCAGGAAGATGCTGGAGGTGCTAGTGATGAAGCTGCCTCGCTCTGAGCACTGGGCCTTGCCTGGGGGCTCTAGGGAGCCAGGGGAGATGCTACCACGGAAGCTGAAACGGGTCCTCCGGCAGGAGTTCTGGGTGGCCTTTGAGACCTTGCTGATGCAAGGTACAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGAGATGCTACCACGGAAG
59.89
CGGACTGGGTCAATGGTGAA
59.96
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATGCTACCACGGAAGCTGA
59.82
CGGACTGGGTCAATGGTGAA
59.96
156
PCR template sequence:
CTCTAGGGAGCCAGGGGAGATGCTACCACGGAAGCTGAAACGGGTCCTCCGGCAGGAGTTCTGGGTGGCCTTTGAGACCTTGCTGATGCAAGGTACAGAGGTGCAGGGAGTGAGCCTCCGGTCCCTCTATAAGCGATCAACAGGCCACGTTACCTTCACCATTGACCCAGTCCGTGACCTTCTCATTTGGGCCGTTATCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-16-5p(1), mmu-miR-34c-5p(1), mmu-miR-19a-3p(1), mmu-miR-298-5p(1), mmu-miR-196a-5p(1), mmu-miR-709(1), mmu-miR-143-3p(1), mmu-miR-339-5p(1), mmu-miR-128-3p(1), mmu-miR-503-5p(1), mmu-miR-149-5p(1), mmu-miR-301b-3p(1), mmu-miR-301a-3p(1), mmu-miR-666-5p(1), mmu-miR-383-5p(1), mmu-miR-224-5p(1), mmu-miR-207(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-3105-3p(1), mmu-miR-376a-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAAGGTACAGAGGTGCAGGGAGTGA
siRNA sets
TCACTCCCTGCACCTCTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTRPM2_2469_ORF_1
1.3124
0.458236861
1
4710
ORF sequence:
ATGCTGGCACTGGCAGACGAGTTTGAGCACAGAGCTATAGGCGTCTTCACTGAGTGCTACAGGAAGGATGAGGAAAGAGCCCAGAAGCTGCTTGTCCGTGTGTCTGAGGCCTGGGGGAAGACCACCTGCCTGCAGCTGGCCCTAGAGGCCAAGGACATGAAATTCGTGTCTCATGGAGGCATCCAGGCTTTCCTAACCAAGGTGTGGTGGGGCCAGCTCTGTGTGGACAATGGCCTGTGGAGGATCATCCTGTGCATGCTGGCCTTCCCGCTGCTCTTCACCGGCTTCATCTCCTTCAGGGAAAAGAGGCTGCAGGCACTGTGTCGCCCAGCCCGCGTCCGCGCCTTCTTCAATGCGCCTGTGGTCATCTTCCACATGAATATCCTCTCCTACTTTGCCTTCCTCTGCCTGTTCGCCTACGTGCTCATGGTGGACTTCCAGCCTTCTCCATCCTGGTGCGAGTACCTCATCTACCTGTGGCTCTTCTCCCTGGTGTGCGAAGAGACTCGGCAGCTATTCTATGATCCTGATGGCTGTGGACTAATGAAGATGGCGTCCCTGTACTTCAGTGACTTCTGGAACAAACTGGACGTTGGGGCCATTCTGCTCTTCATAGTAGGACTGACCTGTCGGCTCATCCCAGCGACGCTGTACCCTGGGCGCATCATCCTGTCTTTGGACTTCATCATGTTCTGTCTCCGTCTCATGCACATCTTCACTATTAGCAAGACACTGGGGCCCAAGATAATCATCGTGAAGCGGATGATGAAGGACGTCTTCTTCTTCCTCTTTCTCCTGGCGGTGTGGGTGGTGTCCTTCGGCGTAGCTAAGCAGGCCATTCTCATACATAACGAGAGCCGCGTGGACTGGATCTTCCGTGGGGTTGTCTATCACTCTTACCTGACCATCTTTGGCCAGATCCCAACCTACATTGACGGTGTGAATTTCAGCATGGACCAGTGCAGCCCCAATGGCACGGACCCCTACAAGCCTAAGTGTCCTGAGAGCGACTGGACGGGACAGGCACCTGCCTTCCCCGAGTGGCTGACTGTCACCCTGCTCTGCCTCTACCTGCTCTTTGCCAACATCCTGCTGCTTAACCTGCTCATCGCCATGTTCAACTACACCTTCCAGGAGGTGCAGGAACACACAGACCAGATCTGGAAATTCCAGCGCCACGACCTGATCGAGGAGTACCATGGCCGTCCCCCGGCACCTCCCCCACTCATCCTCCTCAGCCACCTGCAGCTCCTGATCAAGAGGATTGTCCTGAAGATCCCTGCCAAGAGGCATAAGCAGCTCAAGAACAAGCTGGAGAAGAACGAGGAGACAGCGCTCCTGTCTTGGGAACTGTACCTGAAGGAGAACTACCTGCAGAACCAGCAGTACCAGCAGAAACAGCGTCCAGAGCAGAAAATCCAAGACATCAGTGAGAAAGTGGACACCATGGTGGATCTGCTGGACATGGACCAGGTGAAGAGGTCAGGCTCCACAGAGCAGAGACTGGCTTCCCTGGAGGAACAGGTGACTCAGGTGACCAGAGCTTTGCACTGGATCGTGACAACCCTGAAGGACAGTGGCTTTGGCTCAGGAGCAGGTGCGCTGACCCTGGCACCCCAGAGGGCCTTCGATGAGCCAGATGCTGAGCTGAGTATCAGGAGGAAAGTAGAGGAACCAGGAGATGGTTACCACGTGAGCGCCCGGCATCTCCTCTATCCCAATGCCCGCATCATGCGCTTCCCCGTGCCTAACGAGAAGGTGCCTTGGGCGGCAGAGTTTCTGATCTACGATCCTCCCTTTTACACCGCTGAGAAGGATGTGGCTCTCACAGACCCCGTGGGAGACACTGCAGAACCTCTGTCTAAGATCAGTTACAACGTCGTGGATGGACCGACGGACCGTCGCAGCTTCCATGGAGTCTACGTGGTCGAGTATGGGTTCCCGTTGAACCCCATGGGCCGCACAGGGTTGCGTGGTCGTGGGAGCCTCAGCTGGTTTGGTCCCAACCACACTCTGCAGCCAGTTGTCACCCGGTGGAAGAGGAACCAGGGTGGAGCCATCTGCCGGAAGAGTGTCAGGAAGATGCTGGAGGTGCTAGTGATGAAGCTGCCTCGCTCTGAGCACTGGGCCTTGCCTGGGGGCTCTAGGGAGCCAGGGGAGATGCTACCACGGAAGCTGAAACGGGTCCTCCGGCAGGAGTTCTGGGTGGCCTTTGAGACCTTGCTGATGCAAGGTACAGAGGTGCAGGGAGTGAGCCTCCGGTCCCTCTATAAGCGATCAACAGGCCACGTTACCTTCACCATTGACCCAGTCCGTGACCTTCTCATTTGGGCCGTTATCCAGAACCACAGGGAGCTGGCAGGCATCATCTGGGCTCAGAGTCAGGACTGTACTGCCGCAGCACTGGCCTGTAGCAAGATCCTGAAGGAGCTGTCCAAGGAGGAGGAAGATACAGACAGCTCTGAGGAGATGCTGGCACTGGCAGACGAGTTTGAGCACAGAGCTATAGGCGTCTTCACTGAGTGCTACAGGAAGGATGAGGAAAGAGCCCAGAAGCTGCTTGTCCGTGTGTCTGAGGCCTGGGGGAAGACCACCTGCCTGCAGCTGGCCCTAGAGGCCAAGGACATGAAATTCGTGTCTCATGGAGGCATCCAGGCTTTCCTAACCAAGGTGTGGTGGGGCCAGCTCTGTGTGGACAATGGCCTGTGGAGGATCATCCTGTGCATGCTGGCCTTCCCGCTGCTCTTCACCGGCTTCATCTCCTTCAGGGAAAAGAGGCTGCAGGCACTGTGTCGCCCAGCCCGCGTCCGCGCCTTCTTCAATGCGCCTGTGGTCATCTTCCACATGAATATCCTCTCCTACTTTGCCTTCCTCTGCCTGTTCGCCTACGTGCTCATGGTGGACTTCCAGCCTTCTCCATCCTGGTGCGAGTACCTCATCTACCTGTGGCTCTTCTCCCTGGTGTGCGAAGAGACTCGGCAGCTATTCTATGATCCTGATGGCTGTGGACTAATGAAGATGGCGTCCCTGTACTTCAGTGACTTCTGGAACAAACTGGACGTTGGGGCCATTCTGCTCTTCATAGTAGGACTGACCTGTCGGCTCATCCCAGCGACGCTGTACCCTGGGCGCATCATCCTGTCTTTGGACTTCATCATGTTCTGTCTCCGTCTCATGCACATCTTCACTATTAGCAAGACACTGGGGCCCAAGATAATCATCGTGAAGCGGATGATGAAGGACGTCTTCTTCTTCCTCTTTCTCCTGGCGGTGTGGGTGGTGTCCTTCGGCGTAGCTAAGCAGGCCATTCTCATACATAACGAGAGCCGCGTGGACTGGATCTTCCGTGGGGTTGTCTATCACTCTTACCTGACCATCTTTGGCCAGATCCCAACCTACATTGACGGTGTGAATTTCAGCATGGACCAGTGCAGCCCCAATGGCACGGACCCCTACAAGCCTAAGTGTCCTGAGAGCGACTGGACGGGACAGGCACCTGCCTTCCCCGAGTGGCTGACTGTCACCCTGCTCTGCCTCTACCTGCTCTTTGCCAACATCCTGCTGCTTAACCTGCTCATCGCCATGTTCAACTACACCTTCCAGGAGGTGCAGGAACACACAGACCAGATCTGGAAATTCCAGCGCCACGACCTGATCGAGGAGTACCATGGCCGTCCCCCGGCACCTCCCCCACTCATCCTCCTCAGCCACCTGCAGCTCCTGATCAAGAGGATTGTCCTGAAGATCCCTGCCAAGAGGCATAAGCAGCTCAAGAACAAGCTGGAGAAGAACGAGGAGACAGCGCTCCTGTCTTGGGAACTGTACCTGAAGGAGAACTACCTGCAGAACCAGCAGTACCAGCAGAAACAGCGTCCAGAGCAGAAAATCCAAGACATCAGTGAGAAAGTGGACACCATGGTGGATCTGCTGGACATGGACCAGGTGAAGAGGTCAGGCTCCACAGAGCAGAGACTGGCTTCCCTGGAGGAACAGGTGACTCAGGTGACCAGAGCTTTGCACTGGATCGTGACAACCCTGAAGGACAGTGGCTTTGGCTCAGGAGCAGGTGCGCTGACCCTGGCACCCCAGAGGGCCTTCGATGAGCCAGATGCTGAGCTGAGTATCAGGAGGAAAGTAGAGGAACCAGGAGATGGTTACCACGTGAGCGCCCGGCATCTCCTCTATCCCAATGCCCGCATCATGCGCTTCCCCGTGCCTAACGAGAAGGTGCCTTGGGCGGCAGAGTTTCTGATCTACGATCCTCCCTTTTACACCGCTGAGAAGGATGTGGCTCTCACAGACCCCGTGGGAGACACTGCAGAACCTCTGTCTAAGATCAGTTACAACGTCGTGGATGGACCGACGGACCGTCGCAGCTTCCATGGAGTCTACGTGGTCGAGTATGGGTTCCCGTTGAACCCCATGGGCCGCACAGGGTTGCGTGGTCGTGGGAGCCTCAGCTGGTTTGGTCCCAACCACACTCTGCAGCCAGTTGTCACCCGGTGGAAGAGGAACCAGGGTGGAGCCATCTGCCGGAAGAGTGTCAGGAAGATGCTGGAGGTGCTAGTGATGAAGCTGCCTCGCTCTGAGCACTGGGCCTTGCCTGGGGGCTCTAGGGAGCCAGGGGAGATGCTACCACGGAAGCTGAAACGGGTCCTCCGGCAGGAGTTCTGGGTGGCCTTTGAGACCTTGCTGATGCAAGGTACAGAG
Peptide sequence:
MLALADEFEHRAIGVFTECYRKDEERAQKLLVRVSEAWGKTTCLQLALEAKDMKFVSHGGIQAFLTKVWWGQLCVDNGLWRIILCMLAFPLLFTGFISFREKRLQALCRPARVRAFFNAPVVIFHMNILSYFAFLCLFAYVLMVDFQPSPSWCEYLIYLWLFSLVCEETRQLFYDPDGCGLMKMASLYFSDFWNKLDVGAILLFIVGLTCRLIPATLYPGRIILSLDFIMFCLRLMHIFTISKTLGPKIIIVKRMMKDVFFFLFLLAVWVVSFGVAKQAILIHNESRVDWIFRGVVYHSYLTIFGQIPTYIDGVNFSMDQCSPNGTDPYKPKCPESDWTGQAPAFPEWLTVTLLCLYLLFANILLLNLLIAMFNYTFQEVQEHTDQIWKFQRHDLIEEYHGRPPAPPPLILLSHLQLLIKRIVLKIPAKRHKQLKNKLEKNEETALLSWELYLKENYLQNQQYQQKQRPEQKIQDISEKVDTMVDLLDMDQVKRSGSTEQRLASLEEQVTQVTRALHWIVTTLKDSGFGSGAGALTLAPQRAFDEPDAELSIRRKVEEPGDGYHVSARHLLYPNARIMRFPVPNEKVPWAAEFLIYDPPFYTAEKDVALTDPVGDTAEPLSKISYNVVDGPTDRRSFHGVYVVEYGFPLNPMGRTGLRGRGSLSWFGPNHTLQPVVTRWKRNQGGAICRKSVRKMLEVLVMKLPRSEHWALPGGSREPGEMLPRKLKRVLRQEFWVAFETLLMQGTEVQGVSLRSLYKRSTGHVTFTIDPVRDLLIWAVIQNHRELAGIIWAQSQDCTAAALACSKILKELSKEEEDTDSSEEMLALADEFEHRAIGVFTECYRKDEERAQKLLVRVSEAWGKTTCLQLALEAKDMKFVSHGGIQAFLTKVWWGQLCVDNGLWRIILCMLAFPLLFTGFISFREKRLQALCRPARVRAFFNAPVVIFHMNILSYFAFLCLFAYVLMVDFQPSPSWCEYLIYLWLFSLVCEETRQLFYDPDGCGLMKMASLYFSDFWNKLDVGAILLFIVGLTCRLIPATLYPGRIILSLDFIMFCLRLMHIFTISKTLGPKIIIVKRMMKDVFFFLFLLAVWVVSFGVAKQAILIHNESRVDWIFRGVVYHSYLTIFGQIPTYIDGVNFSMDQCSPNGTDPYKPKCPESDWTGQAPAFPEWLTVTLLCLYLLFANILLLNLLIAMFNYTFQEVQEHTDQIWKFQRHDLIEEYHGRPPAPPPLILLSHLQLLIKRIVLKIPAKRHKQLKNKLEKNEETALLSWELYLKENYLQNQQYQQKQRPEQKIQDISEKVDTMVDLLDMDQVKRSGSTEQRLASLEEQVTQVTRALHWIVTTLKDSGFGSGAGALTLAPQRAFDEPDAELSIRRKVEEPGDGYHVSARHLLYPNARIMRFPVPNEKVPWAAEFLIYDPPFYTAEKDVALTDPVGDTAEPLSKISYNVVDGPTDRRSFHGVYVVEYGFPLNPMGRTGLRGRGSLSWFGPNHTLQPVVTRWKRNQGGAICRKSVRKMLEVLVMKLPRSEHWALPGGSREPGEMLPRKLKRVLRQEFWVAFETLLMQGTE
IRESfinder result
IRESfinder score
0.454146678
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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