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mmu_circTrp53bp1_2343
Basic information of circular RNA
PanCircBase ID:
mmu_circTrp53bp1_2343
mm39_Chr. Position ID:
chr2|121058125|121084212|-
Gene name:
Trp53bp1
Transcript:
ENSMUST00000110647.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
14,13,12,11,10,9,8,7
Exon/intron offsets:
0,943,7928,16249,19856,20519,24223,25957
Genomic length:
26087
Exon/intron sizes in nt:
2,04,12,01,29,72,03,95,00,00,00,000
Flanking exon/introns:
chr2:121054243-121058125|chr2:121084212-121087002
Splice length:
2343
Other database IDs:
CIRCpedia: MMU_CIRCpedia_5374, circAtlas: mmu-Trp53bp1_0040
Human Ortholog IDs:
Mature spliced Sequence:
CAATTAAATGTGAAGAACAGCCCACTGAAGATATTGCCATGATAGAACAGCCCAGCAAAGACATCCCTGTTACAGTACAGCCCGGTAAAGGTATCCATGTGGTAGAAGAACAAAATCTACCACTTGTAAGGTCCGAAGACCGGCCGTCCAGTCCTCAAGTTTCTGTTGCTGCTGTGGAAACAAAGGAACAGGTACCTGCCCGGGAGCTGCTGGAAGAGGGGCCGCAGGTTCAGCCGTCATCAGAGCCTGAGGTTTCCTCAACCCAGGAGGACTTGTTTGACCAGAGTAGTAAAACAGCTTCTGATGGTTGTTCTACTCCTTCAAGGGAGGAAGGTGGGTGCTCTCCGGTTTCCACACCTGCTACCACCCTGCAGCTCCTGCAGCTCTCTGGTCAGAAGCCCCTTGTTCAGGAGAGTCTTTCCACGAATTCCTCAGATCTTGTTGCTCCTTCCCCTGATGCTTTCCGATCTACCCCTTTTATCGTTCCTAGCAGTCCCACAGAGCAAGGAGGGAGAAAAGATGAGCCCATGGATATGTCAGTGATACCTGTAGGAGGGGAGCCTTTCCAGAAGCTTCATGATGACGAAGCAATGGAGACAGAAAAACCCCTTCTCCCGTCTCAGCCTGCTGTGTCACCGCAAGCATCAACACCAGTGTCTCGGAGCACGCCAGTTTTCACTCCTGGCTCTCTTCCCATCCCGTCCCAGCCCGAGTTCTCTCATGACATTTTCATTCCATCACCAAGTCTGGAAGAACCATCAGATGATGTGAAGAAAGGTGGAGGTTTACATAGCTCATCTCTTACTGTTGAGTGTTCCAAGACTTCAGAGAGTGAACCAAAGAATTTCACTGATGACCTTGGGCTCTCCATGACAGGGGATTCTTGCAAACTGATGCTTTCTACAAGTGAGTATAGTCAGTCCTCAAAGATGGAGAGCTTGGGTTCTCCCAGGACTGAGGAAGACAGAGAGAACACACAGATTGACGATACTGAACCTTTGTCTCCAGTTAGCAATTCTAAACTTCCTGCTGACAGTGAGAATGTCCTGGTGACTCCATCGCAGGACGACCAGGTAGAAATGAGTCAGAATGTAGATAAAGCAAAAGAGGATGAAACGGAGGACAGAGGTGACTGTAAAGGCAGAGAAGACGCGGTTGCTGAAGATGTTTGCATCGACCTCACTTGTGATTCTGGGAGTCAGGCAGTTCCTTCTCCAGCTACCCGTTCGGAGGCACTTTCCAGTGTCTTAGATCAGGAGGAAGCTATGGACACTAAAGAACACCATCCAGAGGAAGGGTTTTCGGGATCTGAAGTAGAAGAAGTCCCTGAGACTCCCTGTGGAAGTCACAGAGAGGAGCCCAAAGAAGAACCGATGGAAAGTATCCCACTGCACCTTTCTCTGACTGAAACCCAGTCTGAGGCATTGTGTCTGCAGAAGGAAGCCCCCAAAGAGGAATGCCCAGAAGCTATGGAAGTTGAAACCAGTGTGATTAGTATTGACTCCCCCCAGAAACTGCAAGTACTTGACCAGGAATTAGAGCATAAGGACCCAGACACCTGGGAAGAAGCTACTTCTGAGGACTCCAGTGTTGTTATCGTTGATGTGAAGGAGCCCTCTCCTCGAGCTGATGTTTCCTGTGAACCTTTGGAGGAGGTGGAGAAATGCTCTGACTCCCAGTCCTGGGAGGGTGTGGCTCCAGAGGAAGAACCATGTGCTGAGAATAGATTAGATACTCCAGAAGAAAAGCGTATAGAATGTGATGGAGATTCAAAAGCAGAGACCACAGAAAAGGACGCTGTAACAGAAGACTCTCCACAACCTCCTTTGCCTTCAGTGAGAGACGAACCTGTCAGACCCGATCAGGAGACACAGCAGCCCCAAGTTCAAGAGAAAGAGAGCCCAGTGACTGTAGATGCAGAAGTGGCTGATGACAAGCAGCTGGGACCAGAGGGCGCATGCCAGCAGCTTGAGAAGGCCCCTGCCTGTGCCTCACAGAGTTTCTGTGAAAGTTCTAGTGAAACTCCATTTCATTTCACTTTGCCTAAAGAAGGTGATATTATCCCACCATTGACTGGCGCAACCCCACCTCTTATTGGGCACCTAAAATTGGAGCCCAAGAGACATAGTACTCCTATTGGGATTAGCAACTATCCAGAAAGCACCATAGCAACCAGTGATGTCACATCTGAAAGCATGGTGGAGATCAATGATCCTCTACTTGGGAATGAAAAAGGGGATTCTGAGTCTGCCCCAGAAATGGATGGAAAACTGTCTCTGAAAATGAAACTGGTTAGTCCTGAGACAGAGGCCAGTGAAGAATCTTTGCAATTTAGCCTGGAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCCCCAGAAATGGATGGA
59.74
ACAGGGATGTCTTTGCTGGG
59.96
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCCCCAGAAATGGATGG
59.74
ACAGGGATGTCTTTGCTGGG
59.96
167
PCR template sequence:
GAGTCTGCCCCAGAAATGGATGGAAAACTGTCTCTGAAAATGAAACTGGTTAGTCCTGAGACAGAGGCCAGTGAAGAATCTTTGCAATTTAGCCTGGAAACAATTAAATGTGAAGAACAGCCCACTGAAGATATTGCCATGATAGAACAGCCCAGCAAAGACATCCCTGTTACAGTACAGCCCGGTAAAGGTATCCATGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-223-3p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-143-3p(1), mmu-miR-339-5p(1), mmu-miR-139-5p(1), mmu-miR-214-3p(1), mmu-miR-136-5p(1), mmu-miR-26b-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-676-3p(1), mmu-miR-127-5p(1), mmu-miR-483-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-484(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTAGCCTGGAAACAATTAAATGTGA
siRNA sets
CATTTAATTGTTTCCAGGC, ACATTTAATTGTTTCCAGG, ATTTAATTGTTTCCAGGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTRP53BP1_2343_ORF_1
1.2076
0.196584019
1
4647
ORF sequence:
ATGATAGAACAGCCCAGCAAAGACATCCCTGTTACAGTACAGCCCGGTAAAGGTATCCATGTGGTAGAAGAACAAAATCTACCACTTGTAAGGTCCGAAGACCGGCCGTCCAGTCCTCAAGTTTCTGTTGCTGCTGTGGAAACAAAGGAACAGGTACCTGCCCGGGAGCTGCTGGAAGAGGGGCCGCAGGTTCAGCCGTCATCAGAGCCTGAGGTTTCCTCAACCCAGGAGGACTTGTTTGACCAGAGTAGTAAAACAGCTTCTGATGGTTGTTCTACTCCTTCAAGGGAGGAAGGTGGGTGCTCTCCGGTTTCCACACCTGCTACCACCCTGCAGCTCCTGCAGCTCTCTGGTCAGAAGCCCCTTGTTCAGGAGAGTCTTTCCACGAATTCCTCAGATCTTGTTGCTCCTTCCCCTGATGCTTTCCGATCTACCCCTTTTATCGTTCCTAGCAGTCCCACAGAGCAAGGAGGGAGAAAAGATGAGCCCATGGATATGTCAGTGATACCTGTAGGAGGGGAGCCTTTCCAGAAGCTTCATGATGACGAAGCAATGGAGACAGAAAAACCCCTTCTCCCGTCTCAGCCTGCTGTGTCACCGCAAGCATCAACACCAGTGTCTCGGAGCACGCCAGTTTTCACTCCTGGCTCTCTTCCCATCCCGTCCCAGCCCGAGTTCTCTCATGACATTTTCATTCCATCACCAAGTCTGGAAGAACCATCAGATGATGTGAAGAAAGGTGGAGGTTTACATAGCTCATCTCTTACTGTTGAGTGTTCCAAGACTTCAGAGAGTGAACCAAAGAATTTCACTGATGACCTTGGGCTCTCCATGACAGGGGATTCTTGCAAACTGATGCTTTCTACAAGTGAGTATAGTCAGTCCTCAAAGATGGAGAGCTTGGGTTCTCCCAGGACTGAGGAAGACAGAGAGAACACACAGATTGACGATACTGAACCTTTGTCTCCAGTTAGCAATTCTAAACTTCCTGCTGACAGTGAGAATGTCCTGGTGACTCCATCGCAGGACGACCAGGTAGAAATGAGTCAGAATGTAGATAAAGCAAAAGAGGATGAAACGGAGGACAGAGGTGACTGTAAAGGCAGAGAAGACGCGGTTGCTGAAGATGTTTGCATCGACCTCACTTGTGATTCTGGGAGTCAGGCAGTTCCTTCTCCAGCTACCCGTTCGGAGGCACTTTCCAGTGTCTTAGATCAGGAGGAAGCTATGGACACTAAAGAACACCATCCAGAGGAAGGGTTTTCGGGATCTGAAGTAGAAGAAGTCCCTGAGACTCCCTGTGGAAGTCACAGAGAGGAGCCCAAAGAAGAACCGATGGAAAGTATCCCACTGCACCTTTCTCTGACTGAAACCCAGTCTGAGGCATTGTGTCTGCAGAAGGAAGCCCCCAAAGAGGAATGCCCAGAAGCTATGGAAGTTGAAACCAGTGTGATTAGTATTGACTCCCCCCAGAAACTGCAAGTACTTGACCAGGAATTAGAGCATAAGGACCCAGACACCTGGGAAGAAGCTACTTCTGAGGACTCCAGTGTTGTTATCGTTGATGTGAAGGAGCCCTCTCCTCGAGCTGATGTTTCCTGTGAACCTTTGGAGGAGGTGGAGAAATGCTCTGACTCCCAGTCCTGGGAGGGTGTGGCTCCAGAGGAAGAACCATGTGCTGAGAATAGATTAGATACTCCAGAAGAAAAGCGTATAGAATGTGATGGAGATTCAAAAGCAGAGACCACAGAAAAGGACGCTGTAACAGAAGACTCTCCACAACCTCCTTTGCCTTCAGTGAGAGACGAACCTGTCAGACCCGATCAGGAGACACAGCAGCCCCAAGTTCAAGAGAAAGAGAGCCCAGTGACTGTAGATGCAGAAGTGGCTGATGACAAGCAGCTGGGACCAGAGGGCGCATGCCAGCAGCTTGAGAAGGCCCCTGCCTGTGCCTCACAGAGTTTCTGTGAAAGTTCTAGTGAAACTCCATTTCATTTCACTTTGCCTAAAGAAGGTGATATTATCCCACCATTGACTGGCGCAACCCCACCTCTTATTGGGCACCTAAAATTGGAGCCCAAGAGACATAGTACTCCTATTGGGATTAGCAACTATCCAGAAAGCACCATAGCAACCAGTGATGTCACATCTGAAAGCATGGTGGAGATCAATGATCCTCTACTTGGGAATGAAAAAGGGGATTCTGAGTCTGCCCCAGAAATGGATGGAAAACTGTCTCTGAAAATGAAACTGGTTAGTCCTGAGACAGAGGCCAGTGAAGAATCTTTGCAATTTAGCCTGGAAACAATTAAATGTGAAGAACAGCCCACTGAAGATATTGCCATGATAGAACAGCCCAGCAAAGACATCCCTGTTACAGTACAGCCCGGTAAAGGTATCCATGTGGTAGAAGAACAAAATCTACCACTTGTAAGGTCCGAAGACCGGCCGTCCAGTCCTCAAGTTTCTGTTGCTGCTGTGGAAACAAAGGAACAGGTACCTGCCCGGGAGCTGCTGGAAGAGGGGCCGCAGGTTCAGCCGTCATCAGAGCCTGAGGTTTCCTCAACCCAGGAGGACTTGTTTGACCAGAGTAGTAAAACAGCTTCTGATGGTTGTTCTACTCCTTCAAGGGAGGAAGGTGGGTGCTCTCCGGTTTCCACACCTGCTACCACCCTGCAGCTCCTGCAGCTCTCTGGTCAGAAGCCCCTTGTTCAGGAGAGTCTTTCCACGAATTCCTCAGATCTTGTTGCTCCTTCCCCTGATGCTTTCCGATCTACCCCTTTTATCGTTCCTAGCAGTCCCACAGAGCAAGGAGGGAGAAAAGATGAGCCCATGGATATGTCAGTGATACCTGTAGGAGGGGAGCCTTTCCAGAAGCTTCATGATGACGAAGCAATGGAGACAGAAAAACCCCTTCTCCCGTCTCAGCCTGCTGTGTCACCGCAAGCATCAACACCAGTGTCTCGGAGCACGCCAGTTTTCACTCCTGGCTCTCTTCCCATCCCGTCCCAGCCCGAGTTCTCTCATGACATTTTCATTCCATCACCAAGTCTGGAAGAACCATCAGATGATGTGAAGAAAGGTGGAGGTTTACATAGCTCATCTCTTACTGTTGAGTGTTCCAAGACTTCAGAGAGTGAACCAAAGAATTTCACTGATGACCTTGGGCTCTCCATGACAGGGGATTCTTGCAAACTGATGCTTTCTACAAGTGAGTATAGTCAGTCCTCAAAGATGGAGAGCTTGGGTTCTCCCAGGACTGAGGAAGACAGAGAGAACACACAGATTGACGATACTGAACCTTTGTCTCCAGTTAGCAATTCTAAACTTCCTGCTGACAGTGAGAATGTCCTGGTGACTCCATCGCAGGACGACCAGGTAGAAATGAGTCAGAATGTAGATAAAGCAAAAGAGGATGAAACGGAGGACAGAGGTGACTGTAAAGGCAGAGAAGACGCGGTTGCTGAAGATGTTTGCATCGACCTCACTTGTGATTCTGGGAGTCAGGCAGTTCCTTCTCCAGCTACCCGTTCGGAGGCACTTTCCAGTGTCTTAGATCAGGAGGAAGCTATGGACACTAAAGAACACCATCCAGAGGAAGGGTTTTCGGGATCTGAAGTAGAAGAAGTCCCTGAGACTCCCTGTGGAAGTCACAGAGAGGAGCCCAAAGAAGAACCGATGGAAAGTATCCCACTGCACCTTTCTCTGACTGAAACCCAGTCTGAGGCATTGTGTCTGCAGAAGGAAGCCCCCAAAGAGGAATGCCCAGAAGCTATGGAAGTTGAAACCAGTGTGATTAGTATTGACTCCCCCCAGAAACTGCAAGTACTTGACCAGGAATTAGAGCATAAGGACCCAGACACCTGGGAAGAAGCTACTTCTGAGGACTCCAGTGTTGTTATCGTTGATGTGAAGGAGCCCTCTCCTCGAGCTGATGTTTCCTGTGAACCTTTGGAGGAGGTGGAGAAATGCTCTGACTCCCAGTCCTGGGAGGGTGTGGCTCCAGAGGAAGAACCATGTGCTGAGAATAGATTAGATACTCCAGAAGAAAAGCGTATAGAATGTGATGGAGATTCAAAAGCAGAGACCACAGAAAAGGACGCTGTAACAGAAGACTCTCCACAACCTCCTTTGCCTTCAGTGAGAGACGAACCTGTCAGACCCGATCAGGAGACACAGCAGCCCCAAGTTCAAGAGAAAGAGAGCCCAGTGACTGTAGATGCAGAAGTGGCTGATGACAAGCAGCTGGGACCAGAGGGCGCATGCCAGCAGCTTGAGAAGGCCCCTGCCTGTGCCTCACAGAGTTTCTGTGAAAGTTCTAGTGAAACTCCATTTCATTTCACTTTGCCTAAAGAAGGTGATATTATCCCACCATTGACTGGCGCAACCCCACCTCTTATTGGGCACCTAAAATTGGAGCCCAAGAGACATAGTACTCCTATTGGGATTAGCAACTATCCAGAAAGCACCATAGCAACCAGTGATGTCACATCTGAAAGCATGGTGGAGATCAATGATCCTCTACTTGGGAATGAAAAAGGGGATTCTGAGTCTGCCCCAGAAATGGATGGAAAACTGTCTCTGAAAATGAAACTGGTTAGTCCTGAGACAGAGGCCAGTGAAGAATCTTTGCAATTTAGCCTGGAA
Peptide sequence:
MIEQPSKDIPVTVQPGKGIHVVEEQNLPLVRSEDRPSSPQVSVAAVETKEQVPARELLEEGPQVQPSSEPEVSSTQEDLFDQSSKTASDGCSTPSREEGGCSPVSTPATTLQLLQLSGQKPLVQESLSTNSSDLVAPSPDAFRSTPFIVPSSPTEQGGRKDEPMDMSVIPVGGEPFQKLHDDEAMETEKPLLPSQPAVSPQASTPVSRSTPVFTPGSLPIPSQPEFSHDIFIPSPSLEEPSDDVKKGGGLHSSSLTVECSKTSESEPKNFTDDLGLSMTGDSCKLMLSTSEYSQSSKMESLGSPRTEEDRENTQIDDTEPLSPVSNSKLPADSENVLVTPSQDDQVEMSQNVDKAKEDETEDRGDCKGREDAVAEDVCIDLTCDSGSQAVPSPATRSEALSSVLDQEEAMDTKEHHPEEGFSGSEVEEVPETPCGSHREEPKEEPMESIPLHLSLTETQSEALCLQKEAPKEECPEAMEVETSVISIDSPQKLQVLDQELEHKDPDTWEEATSEDSSVVIVDVKEPSPRADVSCEPLEEVEKCSDSQSWEGVAPEEEPCAENRLDTPEEKRIECDGDSKAETTEKDAVTEDSPQPPLPSVRDEPVRPDQETQQPQVQEKESPVTVDAEVADDKQLGPEGACQQLEKAPACASQSFCESSSETPFHFTLPKEGDIIPPLTGATPPLIGHLKLEPKRHSTPIGISNYPESTIATSDVTSESMVEINDPLLGNEKGDSESAPEMDGKLSLKMKLVSPETEASEESLQFSLETIKCEEQPTEDIAMIEQPSKDIPVTVQPGKGIHVVEEQNLPLVRSEDRPSSPQVSVAAVETKEQVPARELLEEGPQVQPSSEPEVSSTQEDLFDQSSKTASDGCSTPSREEGGCSPVSTPATTLQLLQLSGQKPLVQESLSTNSSDLVAPSPDAFRSTPFIVPSSPTEQGGRKDEPMDMSVIPVGGEPFQKLHDDEAMETEKPLLPSQPAVSPQASTPVSRSTPVFTPGSLPIPSQPEFSHDIFIPSPSLEEPSDDVKKGGGLHSSSLTVECSKTSESEPKNFTDDLGLSMTGDSCKLMLSTSEYSQSSKMESLGSPRTEEDRENTQIDDTEPLSPVSNSKLPADSENVLVTPSQDDQVEMSQNVDKAKEDETEDRGDCKGREDAVAEDVCIDLTCDSGSQAVPSPATRSEALSSVLDQEEAMDTKEHHPEEGFSGSEVEEVPETPCGSHREEPKEEPMESIPLHLSLTETQSEALCLQKEAPKEECPEAMEVETSVISIDSPQKLQVLDQELEHKDPDTWEEATSEDSSVVIVDVKEPSPRADVSCEPLEEVEKCSDSQSWEGVAPEEEPCAENRLDTPEEKRIECDGDSKAETTEKDAVTEDSPQPPLPSVRDEPVRPDQETQQPQVQEKESPVTVDAEVADDKQLGPEGACQQLEKAPACASQSFCESSSETPFHFTLPKEGDIIPPLTGATPPLIGHLKLEPKRHSTPIGISNYPESTIATSDVTSESMVEINDPLLGNEKGDSESAPEMDGKLSLKMKLVSPETEASEESLQFSLE
IRESfinder result
IRESfinder score
0.57319205
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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