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mmu_circTrim37_738
Basic information of circular RNA
PanCircBase ID:
mmu_circTrim37_738
mm39_Chr. Position ID:
chr11|87033952|87058342|+
Gene name:
Trim37
Transcript:
ENSMUST00000041282.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
5,6,7,8,9,10,11,12
Exon/intron offsets:
0,2337,3807,6169,16694,20692,23475,24313
Genomic length:
24390
Exon/intron sizes in nt:
88,123,124,68,125,51,82,77
Flanking exon/introns:
chr11:87031427-87033952|chr11:87058342-87068674
Splice length:
738
Other database IDs:
CIRCpedia: MMU_CIRCpedia_32740, circAtlas: mmu-Trim37_0010
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATGTGAAAATCACCATGAAAAACTTAGTGTGTTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATGCATGGTGGACACACGTTTAAACCTTTGGCAGAAATTTATGAACAACATGTCACTAAAGTGAATGAAGAGGTAGCCAAACTTCGTCGACGTCTCATGGAGCTGATCAGCTTAGTTCAAGAAGTGGAAAGAAATGTAGAAGCTGTAAGAAATGCAAAGGACGAGCGTGTTCGGGAAATTAGGAATGCGGTAGAGATGATGATTGCACGACTAGATACACAGCTGAAGAATAAGCTCATAACTCTCATGGGTCAGAAGACATCTCTTACTCAAGAAACGGAGCTGTTGGAATCTTTACTTCAGGAGGTAGAACATCAGTTGCGGTCTTGCAGTAAGAGCGAGCTGATCTCCAAGAGCTCAGAGATCCTAATGATGTTCCAGCAAGTTCACCGAAAGCCCATGGCATCCTTTGTCACCACACCTGTCCCACCAGACTTTACCAGTGAATTGGTACCATCCTATGATTCAGCTACTTTTGTTTTAGAGAACTTCAGCACTTTGCGGCAGAGAGCAGATCCTGTTTACAGTCCGCCTCTTCAAGTTTCAGGACTTTGTTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTACGTGGCTATTATTTATCTGTATTTTTGGAACTATCGGCTGGCTTGCCTGAAACTTCCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAATGGAGTTGTACGTGGC
59.53
TGTCCACCATGCATTCCTCC
60.03
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAATGGAGTTGTACGTGGC
59.53
CCAAAGTGCACACTGATGGC
60.04
153
PCR template sequence:
GTTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTACGTGGCTATTATTTATCTGTATTTTTGGAACTATCGGCTGGCTTGCCTGAAACTTCCAAATGTGAAAATCACCATGAAAAACTTAGTGTGTTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATGCATGGTGGACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(2), mmu-miR-106a-5p(2), mmu-miR-93-5p(2), mmu-miR-20a-5p(2), mmu-miR-17-5p(2), mmu-miR-106b-5p(2), mmu-miR-30c-5p(1), mmu-miR-18a-5p(1), mmu-miR-136-5p(1), mmu-miR-382-5p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGAAACTTCCAAATGTGAAAATCAC
siRNA sets
TCACATTTGGAAGTTTCAG, TTCACATTTGGAAGTTTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTRIM37_738_ORF_1
0.8913
0.105104755
0.998923639
1389
ORF sequence:
ATGCATGGTGGACACACGTTTAAACCTTTGGCAGAAATTTATGAACAACATGTCACTAAAGTGAATGAAGAGGTAGCCAAACTTCGTCGACGTCTCATGGAGCTGATCAGCTTAGTTCAAGAAGTGGAAAGAAATGTAGAAGCTGTAAGAAATGCAAAGGACGAGCGTGTTCGGGAAATTAGGAATGCGGTAGAGATGATGATTGCACGACTAGATACACAGCTGAAGAATAAGCTCATAACTCTCATGGGTCAGAAGACATCTCTTACTCAAGAAACGGAGCTGTTGGAATCTTTACTTCAGGAGGTAGAACATCAGTTGCGGTCTTGCAGTAAGAGCGAGCTGATCTCCAAGAGCTCAGAGATCCTAATGATGTTCCAGCAAGTTCACCGAAAGCCCATGGCATCCTTTGTCACCACACCTGTCCCACCAGACTTTACCAGTGAATTGGTACCATCCTATGATTCAGCTACTTTTGTTTTAGAGAACTTCAGCACTTTGCGGCAGAGAGCAGATCCTGTTTACAGTCCGCCTCTTCAAGTTTCAGGACTTTGTTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTACGTGGCTATTATTTATCTGTATTTTTGGAACTATCGGCTGGCTTGCCTGAAACTTCCAAATGTGAAAATCACCATGAAAAACTTAGTGTGTTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATGCATGGTGGACACACGTTTAAACCTTTGGCAGAAATTTATGAACAACATGTCACTAAAGTGAATGAAGAGGTAGCCAAACTTCGTCGACGTCTCATGGAGCTGATCAGCTTAGTTCAAGAAGTGGAAAGAAATGTAGAAGCTGTAAGAAATGCAAAGGACGAGCGTGTTCGGGAAATTAGGAATGCGGTAGAGATGATGATTGCACGACTAGATACACAGCTGAAGAATAAGCTCATAACTCTCATGGGTCAGAAGACATCTCTTACTCAAGAAACGGAGCTGTTGGAATCTTTACTTCAGGAGGTAGAACATCAGTTGCGGTCTTGCAGTAAGAGCGAGCTGATCTCCAAGAGCTCAGAGATCCTAATGATGTTCCAGCAAGTTCACCGAAAGCCCATGGCATCCTTTGTCACCACACCTGTCCCACCAGACTTTACCAGTGAATTGGTACCATCCTATGATTCAGCTACTTTTGTTTTAGAGAACTTCAGCACTTTGCGGCAGAGAGCAGATCCTGTTTACAGTCCGCCTCTTCAAGTTTCAGGACTTTGTTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTACGTGGCTATTATTTATCTGTATTTTTGGAACTATCGGCTGGCTTGCCTGAAACTTCC
Peptide sequence:
MHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETS
IRESfinder result
IRESfinder score
0.618528751
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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