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mmu_circTrappc8_3179
Basic information of circular RNA
PanCircBase ID:
mmu_circTrappc8_3179
mm39_Chr. Position ID:
chr18|20968002|21018314|-
Gene name:
Trappc8
Transcript:
ENSMUST00000225661.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
20
Exon/intron indexes:
21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,1801,6582,9178,10632,11503,12172,15952,17684,19999,25487,27949,28522,30081,31004,32814,35653,38937,39669,50117
Genomic length:
50312
Exon/intron sizes in nt:
14,84,43,15,51,27,75,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr18:20966103-20968002|chr18:21018314-21028967
Splice length:
3179
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TTCACATGAGAGATCCTAATAATCAACTGCATATAATTAAAAATTTGAAGATAGCAGTAAGCAACATTGTCACCCAGCCACCTCAGCCGGGAGCCATTGGGAAGCTTTTGAATGATGTTGTTTCTGGCAGCCAGCCTGCAGAAGGATTAGTCGCTAATGTGATTACAGCAGGAGATTATGACCTTAACATAAGTGCTACTACTCCATGGTTTGAGTCTTACAGAGAGACCTTTCTGCAGTCCATGCCAGCATCAGATCATGAGTTTCTGAATCACTATTTAGCATGTATGCTGGTGGCATCGTCTGGTGAAGCTGAGCCTATGGAACAGTTTTCAAAGTTGTCACAGGAACAGCATCGAATTCAGCACAACAATGATTATTCCTATCCTAAGTGGTTTATCCCAAATACACTTAAATATTACGTGCTTTTGCATGATGTAACTTCAGGAGATGAACAAAGGGCTGAATCAATTTATGAAGAAATGAAACAGAAATATGGAACTCAGGGTTGCTATTTACTTAAAATCAATTCTCGAGCACCAAATCGAGCATCAGATGAACAGATACCAGATCCGTGGAGTCAGTATCTCCAGAAAAATAGTATTCAAAACCAGGAATCATATGAAGATGGCCCTTGTACTATGACCTCCAGTAAGAATTCTGATAGTAACTTGCTTTCATTGGATGGACTAGATAACGAAGTCAAAGTAGATGGCCTACCAAATAACTTCAGAATTCATCCACTTCAAATAGACCAATGCGGTGACCCTCCTAACAATACTGACGGCTCAGAGTCAAAGTCTGCTTCTTCAGTTCACGAGACAAAGAAAGCAAGTACTGCAGTGATTCGTGGTGCTTGCTTAACACTCACTGACCATGATAGAATCCGACAGTTTATACAAGAGTTTACATTCCGTGGCCTTTTGCCACACATAGAGAAAACAATTCGTCAGTTAAATGATCAGCTAATATCAAGGAAAGGTTTGAGTCGATCTCTGTTTTCTGCCACTAAGAAATGGTTTAGTGGTAGTAAAGTTCCAGAAAAGAGCATTAATGAGCTGAAGAATACATCTGGGTTGTTGTATCCGCCAGAAGCGCCCGAGCTTCAGATCAGGAAGATGGCTGACTTGTGCTTCTTGGTGCAACATTATGATTTGGCTTACAGTTGTTATCACACTGCAAAGAAGGATTTTCTTAACGATCAAGCAATGCTTTATGCAGCAGGTGCCTTGGAAATGGCAGCAGTGTCAGCCTTTCTTCAGCCAGGAGCTCCTAGGCCATACCCTGCTCATTACATGGACACAGCAATTCAGACATACAGGGATATCTGCAAGAATATGGTGTTGGCTGAAAGATGTGTGTTGCTTAGTGCTGAAATTTTAAAAAGTCAAAGCAAGTACTCAGAGGCTGCAGCTCTTCTGATACGATTGACAAGTGAGGATTCTGATCTCCGAAGTGCCCTTCTTTTGGAACAGGCTGCACATTGCTTCATAAACATGAAGAGTCCCATGGTTAGAAAATACGCATTTCATATGATCCTGGCAGGCCACCGTTTTAGTAAAGCAGGGCAGAAAAAGCATGCTTTGCGCTGCTATTGTCAAGCCATGCAAGTTTACAAAGGAAAGGGCTGGTCTCTGGCAGAGGATCACATCAACTTCACCATTGGGCGCCAGTCCTATACTCTGAGGCAGCTGGACAATGCTGTTTCTGCTTTTAGACACATTTTAATCAATGAAAGCAAACAGTCTGCTGCTCAGCAAGGAGCCTTCCTCAGAGAATATCTTTATGTTTATAAGAATGTAAATCAGCTGTCACCAGATGGCCCTTTACCACAGCTTCCCTTACCATACATTAACAGTTCAGCAACACGGGTTTTCTTCGGCCATGACAGACGACCAGCAGATGGTGAAAAGCAAGCGGCTACTCATATAAGTCTTGATCAAGAATATGACTCTGAGTCATCCCAGCAGTGGCGGGAACTTGAGGAACATGTTGTGGCTGTGGCTAATAAAGGAGTAATTCCATCCAGTTTCTATCCTACACAGTATTGTCTGAACAGTTACTCCGATAACTCCAGGTTTCCACTTGCAGTTGTAGAAGAGCCAATTACTGTGGAAGTGGCTTTTAGAAACCCTTTAAAAGTTCCGCTTTTGCTGTCTGATTTGTCATTACTCTGGAAGTTTCAGCCTAAAGATGCCAGTGGGAAAGACATTGAAAAAGTGAAAGAACGAGTTACAGGTGAACCTGAAATGATTGGAACTGAAGTTATTTCAGAATTCTTAATTAACAGTGAAGAATCTAAAGTGGCAAGACTGAAGCTCTTTCCCCATCACATAGGGGAGCTGCACATTCTGGGAGTTGTGTATAATCTTGGCACTATTCAGGGCTCCGGGACAGTAGATGGCATTGGTGCTCTTCCTGGATGTCACACAGGAAAACATTCTCTGAGTATGTCAGTACGAGGGAGACAGGATTTAGAAATTCAAGGCCCTCGACTTAACAACACAAAGGAAGAGAAGACATCTGTAAAGTACGGTCCTGACCGACGTTTAGATCCTATAGTCACAGAGGAGATGCCGCTGCTGGAGGTGTTCTTTATACATTTTCCTACAGGGCTCCTCTGTGGAGAAATCCGAAAAGCATATGTAGAGTTTGTCAATGTCAGCAAATGTCCTCTGACTGGACTGAAAGTTGTGTCTAAACGTCCAGAGTTCTTCACTTTTGGTGGCAATACCGCTGCTCTAACACCACTGAGCCCCTCCACATCTGAGAACTGCAGTGCCTATAAGACGGTTGTAACAGCTTCCCCCTCCTTGGGAACAGCACTTGTGTCAACAGCATCATCTATGGACTTTGGAACTGGCACCGGACAGCAGCTGGAGGCCATTCCTGTCCCCCTTCCTGACTCCGTGCTGCTCCCCGGAGCTTCCATCCAGCTGCCAATGTGGCTTCGTGGGCCAGACGAAGAGGGTGTCCATGAAATTAACTTTTTATTTTACTATGAAAGTGTTAAAAAGCAGCCTAAAAAACGACACAGAATATTAAGACACACTGCAGTTATTTGTACTAGCCGGTCTTTGAATGTGCGAGCGACTGTCTGCAGAAGTAATTCACTTGAAGATGAAGAAGGCAGGGGCGGCAATATGCTAGTCTTCGTGGATGTAGAAAATACTAATACT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGATGAAGAAGGCAGGGGC
60.03
GTGGCTGGGTGACAATGTTG
59.69
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCGACTGTCTGCAGAAGT
60.04
GTGGCTGGGTGACAATGTTG
59.69
173
PCR template sequence:
GAATGTGCGAGCGACTGTCTGCAGAAGTAATTCACTTGAAGATGAAGAAGGCAGGGGCGGCAATATGCTAGTCTTCGTGGATGTAGAAAATACTAATACTTTCACATGAGAGATCCTAATAATCAACTGCATATAATTAAAAATTTGAAGATAGCAGTAAGCAACATTGTCACCCAGCCACCTCAGCCGGGAGCCATTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-15b-5p(2), mmu-miR-29b-3p(2), mmu-miR-503-5p(2), mmu-miR-680(2), mmu-miR-124-3p(1), mmu-miR-23b-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-93-5p(1), mmu-miR-1a-3p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-200b-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-211-5p(1), mmu-miR-322-5p(1), mmu-miR-146a-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-125b-5p(1), mmu-miR-23a-3p(1), mmu-miR-10a-5p(1), mmu-miR-24-3p(1), mmu-miR-433-3p(1), mmu-miR-125a-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-499-5p(1), mmu-miR-466a-5p(1), mmu-miR-490-3p(1), mmu-miR-193b-3p(1), mmu-miR-146b-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAATACTAATACTTTCACATGAGAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTRAPPC8_3179_ORF_1
0.9554
0.055283098
0.999999997
3183
ORF sequence:
ATGAGAGATCCTAATAATCAACTGCATATAATTAAAAATTTGAAGATAGCAGTAAGCAACATTGTCACCCAGCCACCTCAGCCGGGAGCCATTGGGAAGCTTTTGAATGATGTTGTTTCTGGCAGCCAGCCTGCAGAAGGATTAGTCGCTAATGTGATTACAGCAGGAGATTATGACCTTAACATAAGTGCTACTACTCCATGGTTTGAGTCTTACAGAGAGACCTTTCTGCAGTCCATGCCAGCATCAGATCATGAGTTTCTGAATCACTATTTAGCATGTATGCTGGTGGCATCGTCTGGTGAAGCTGAGCCTATGGAACAGTTTTCAAAGTTGTCACAGGAACAGCATCGAATTCAGCACAACAATGATTATTCCTATCCTAAGTGGTTTATCCCAAATACACTTAAATATTACGTGCTTTTGCATGATGTAACTTCAGGAGATGAACAAAGGGCTGAATCAATTTATGAAGAAATGAAACAGAAATATGGAACTCAGGGTTGCTATTTACTTAAAATCAATTCTCGAGCACCAAATCGAGCATCAGATGAACAGATACCAGATCCGTGGAGTCAGTATCTCCAGAAAAATAGTATTCAAAACCAGGAATCATATGAAGATGGCCCTTGTACTATGACCTCCAGTAAGAATTCTGATAGTAACTTGCTTTCATTGGATGGACTAGATAACGAAGTCAAAGTAGATGGCCTACCAAATAACTTCAGAATTCATCCACTTCAAATAGACCAATGCGGTGACCCTCCTAACAATACTGACGGCTCAGAGTCAAAGTCTGCTTCTTCAGTTCACGAGACAAAGAAAGCAAGTACTGCAGTGATTCGTGGTGCTTGCTTAACACTCACTGACCATGATAGAATCCGACAGTTTATACAAGAGTTTACATTCCGTGGCCTTTTGCCACACATAGAGAAAACAATTCGTCAGTTAAATGATCAGCTAATATCAAGGAAAGGTTTGAGTCGATCTCTGTTTTCTGCCACTAAGAAATGGTTTAGTGGTAGTAAAGTTCCAGAAAAGAGCATTAATGAGCTGAAGAATACATCTGGGTTGTTGTATCCGCCAGAAGCGCCCGAGCTTCAGATCAGGAAGATGGCTGACTTGTGCTTCTTGGTGCAACATTATGATTTGGCTTACAGTTGTTATCACACTGCAAAGAAGGATTTTCTTAACGATCAAGCAATGCTTTATGCAGCAGGTGCCTTGGAAATGGCAGCAGTGTCAGCCTTTCTTCAGCCAGGAGCTCCTAGGCCATACCCTGCTCATTACATGGACACAGCAATTCAGACATACAGGGATATCTGCAAGAATATGGTGTTGGCTGAAAGATGTGTGTTGCTTAGTGCTGAAATTTTAAAAAGTCAAAGCAAGTACTCAGAGGCTGCAGCTCTTCTGATACGATTGACAAGTGAGGATTCTGATCTCCGAAGTGCCCTTCTTTTGGAACAGGCTGCACATTGCTTCATAAACATGAAGAGTCCCATGGTTAGAAAATACGCATTTCATATGATCCTGGCAGGCCACCGTTTTAGTAAAGCAGGGCAGAAAAAGCATGCTTTGCGCTGCTATTGTCAAGCCATGCAAGTTTACAAAGGAAAGGGCTGGTCTCTGGCAGAGGATCACATCAACTTCACCATTGGGCGCCAGTCCTATACTCTGAGGCAGCTGGACAATGCTGTTTCTGCTTTTAGACACATTTTAATCAATGAAAGCAAACAGTCTGCTGCTCAGCAAGGAGCCTTCCTCAGAGAATATCTTTATGTTTATAAGAATGTAAATCAGCTGTCACCAGATGGCCCTTTACCACAGCTTCCCTTACCATACATTAACAGTTCAGCAACACGGGTTTTCTTCGGCCATGACAGACGACCAGCAGATGGTGAAAAGCAAGCGGCTACTCATATAAGTCTTGATCAAGAATATGACTCTGAGTCATCCCAGCAGTGGCGGGAACTTGAGGAACATGTTGTGGCTGTGGCTAATAAAGGAGTAATTCCATCCAGTTTCTATCCTACACAGTATTGTCTGAACAGTTACTCCGATAACTCCAGGTTTCCACTTGCAGTTGTAGAAGAGCCAATTACTGTGGAAGTGGCTTTTAGAAACCCTTTAAAAGTTCCGCTTTTGCTGTCTGATTTGTCATTACTCTGGAAGTTTCAGCCTAAAGATGCCAGTGGGAAAGACATTGAAAAAGTGAAAGAACGAGTTACAGGTGAACCTGAAATGATTGGAACTGAAGTTATTTCAGAATTCTTAATTAACAGTGAAGAATCTAAAGTGGCAAGACTGAAGCTCTTTCCCCATCACATAGGGGAGCTGCACATTCTGGGAGTTGTGTATAATCTTGGCACTATTCAGGGCTCCGGGACAGTAGATGGCATTGGTGCTCTTCCTGGATGTCACACAGGAAAACATTCTCTGAGTATGTCAGTACGAGGGAGACAGGATTTAGAAATTCAAGGCCCTCGACTTAACAACACAAAGGAAGAGAAGACATCTGTAAAGTACGGTCCTGACCGACGTTTAGATCCTATAGTCACAGAGGAGATGCCGCTGCTGGAGGTGTTCTTTATACATTTTCCTACAGGGCTCCTCTGTGGAGAAATCCGAAAAGCATATGTAGAGTTTGTCAATGTCAGCAAATGTCCTCTGACTGGACTGAAAGTTGTGTCTAAACGTCCAGAGTTCTTCACTTTTGGTGGCAATACCGCTGCTCTAACACCACTGAGCCCCTCCACATCTGAGAACTGCAGTGCCTATAAGACGGTTGTAACAGCTTCCCCCTCCTTGGGAACAGCACTTGTGTCAACAGCATCATCTATGGACTTTGGAACTGGCACCGGACAGCAGCTGGAGGCCATTCCTGTCCCCCTTCCTGACTCCGTGCTGCTCCCCGGAGCTTCCATCCAGCTGCCAATGTGGCTTCGTGGGCCAGACGAAGAGGGTGTCCATGAAATTAACTTTTTATTTTACTATGAAAGTGTTAAAAAGCAGCCTAAAAAACGACACAGAATATTAAGACACACTGCAGTTATTTGTACTAGCCGGTCTTTGAATGTGCGAGCGACTGTCTGCAGAAGTAATTCACTTGAAGATGAAGAAGGCAGGGGCGGCAATATGCTAGTCTTCGTGGATGTAGAAAATACTAATACTTTCACATGA
Peptide sequence:
MRDPNNQLHIIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGLVANVITAGDYDLNISATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNNDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRASDEQIPDPWSQYLQKNSIQNQESYEDGPCTMTSSKNSDSNLLSLDGLDNEVKVDGLPNNFRIHPLQIDQCGDPPNNTDGSESKSASSVHETKKASTAVIRGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDASGKDIEKVKERVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSGTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAALTPLSPSTSENCSAYKTVVTASPSLGTALVSTASSMDFGTGTGQQLEAIPVPLPDSVLLPGASIQLPMWLRGPDEEGVHEINFLFYYESVKKQPKKRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTFT
IRESfinder result
IRESfinder score
0.641705479
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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