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mmu_circTpr_1380
Basic information of circular RNA
PanCircBase ID:
mmu_circTpr_1380
mm39_Chr. Position ID:
chr1|150308569|150317994|+
Gene name:
Tpr
Transcript:
ENSMUST00000124973.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
36,37,38,39,40,41,42,43,44
Exon/intron offsets:
0,859,2824,3899,4584,6263,7248,7620,9240
Genomic length:
9425
Exon/intron sizes in nt:
6,22,09,27,31,49,84,19,00,00,00,000
Flanking exon/introns:
chr1:150308367-150308569|chr1:150317994-150318934
Splice length:
1380
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCTCCAGAACAGCAAAGACAAATCACACTGAAAACCACTCCAGCTTCTGGTGAAAGAGGAATTGCCAGCACATCAGACCCACCAACAGCCAATATCAAGCCAACTCCTGTTGTTTCTACTCCAAGTAAAGTGACAGCTGCAGCTATGGCTGGGAATAAGTCGACACCCAGGGCAAGTATCCGCCCAATGGTTACACCTGCAACGGTCACAAATCCGACCACTACCCCAACAGCAACCGTAATGCCTACTACACAGGTGGAGTCACAGGAAGCTATGCAGTCAGAAGGGCCTGTGGAACATGTTCCAGTATTTGGAAACGCAAGTGGATCTGTTCGTTCTACTAGTCCTAATGTTCAGCCCTCCATTTCTCAGCCCATCCTAACTGTACAGCAGCAAACACAAGCTACAGCTTTTGTACAACCCACTCAACAGAGCCACCCGCAGATTGAGCCTACAAATCAAGAATTGTCCCCAAACATAGTTGAGGTAGTACAAAGTTCCCCAGTGGAGCGTCCATCTACTTCCACAGCAGTATTTGGCACTGTTTCAGCTACCCCAAGTTCCTCCTTGCCAAAGCGCACTCGGGAGGAGGAAGAGGACAGCACCATGGAAGCAGGAGACCAAGTCTCTGAGGACACAGTGGAAATGCCTCTCCCGAAGAAGCTGAAGATGGTCACACCCGTTGGAACCGAGGAAGAAGTTATGGCAGAAGAAAGTACTGATGGAGAGGCAGAAACTCAAGCCTATAATCAGGACTCTCAAGATTCCATTGGAGAAGGAGTTACCCAGGGAGATTATACACCAATGGAAGACAGTGAAGAAACATCACAATCTCTACAAATCGATCTTGGACCACTTCAGTCAGATCAACAGACTACTTCCTCTCAAGATGGTCAAGGCAAAGGAGATGATGTAATTGTAATTGACAGTGATGATGAAGATGATGATGAAGAAAATGATGGCGAACATGAAGATTATGAAGAAGACGAAGATGATGATGATGATGAAGAAGATGACACGGGGATGGGAGATGAGGGTGAAGATAGTAATGAAGGAACTGGTAGTGCAGATGGTAATGATGGATATGAAGCTGATGATGCTGAGGGTGGTGATGGGACTGATCCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGCTGAAAGTCATCAGAGAGCTGCTGATTCTCAAAACAGTGGTGAAGGAAATACAAGTGCAGCAGAGTCTTCCTTCTCTCAGGAGGTTGCCAGGGAACAGCAGCCCACGTCAGCGTCTGAGAGACAGACTCCGCAAGCACCGCAGTCACCAAGGCGCCCTCCACATCCTCTCCCCCCACGCCTGACCATTCACGCCCCACCTCAGGAGCTGGGACCACCAGTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCCACATCCTCTCCCCC
60.77
TTGGTGGGTCTGATGTGCTG
60.25
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTCCACATCCTCTCCCC
60.77
TTGGTGGGTCTGATGTGCTG
60.25
155
PCR template sequence:
GACTCCGCAAGCACCGCAGTCACCAAGGCGCCCTCCACATCCTCTCCCCCCACGCCTGACCATTCACGCCCCACCTCAGGAGCTGGGACCACCAGTTCAGGCTCCAGAACAGCAAAGACAAATCACACTGAAAACCACTCCAGCTTCTGGTGAAAGAGGAATTGCCAGCACATCAGACCCACCAACAGCCAATATCAAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-7a-5p(1), mmu-miR-182-5p(1), mmu-miR-758-3p(1), mmu-miR-541-5p(1), mmu-miR-669d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCACCAGTTCAGGCTCCAGAACAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTPR_1380_ORF_1
1.2507
0.242780057
0.999999954
2616
ORF sequence:
ATGGCTGGGAATAAGTCGACACCCAGGGCAAGTATCCGCCCAATGGTTACACCTGCAACGGTCACAAATCCGACCACTACCCCAACAGCAACCGTAATGCCTACTACACAGGTGGAGTCACAGGAAGCTATGCAGTCAGAAGGGCCTGTGGAACATGTTCCAGTATTTGGAAACGCAAGTGGATCTGTTCGTTCTACTAGTCCTAATGTTCAGCCCTCCATTTCTCAGCCCATCCTAACTGTACAGCAGCAAACACAAGCTACAGCTTTTGTACAACCCACTCAACAGAGCCACCCGCAGATTGAGCCTACAAATCAAGAATTGTCCCCAAACATAGTTGAGGTAGTACAAAGTTCCCCAGTGGAGCGTCCATCTACTTCCACAGCAGTATTTGGCACTGTTTCAGCTACCCCAAGTTCCTCCTTGCCAAAGCGCACTCGGGAGGAGGAAGAGGACAGCACCATGGAAGCAGGAGACCAAGTCTCTGAGGACACAGTGGAAATGCCTCTCCCGAAGAAGCTGAAGATGGTCACACCCGTTGGAACCGAGGAAGAAGTTATGGCAGAAGAAAGTACTGATGGAGAGGCAGAAACTCAAGCCTATAATCAGGACTCTCAAGATTCCATTGGAGAAGGAGTTACCCAGGGAGATTATACACCAATGGAAGACAGTGAAGAAACATCACAATCTCTACAAATCGATCTTGGACCACTTCAGTCAGATCAACAGACTACTTCCTCTCAAGATGGTCAAGGCAAAGGAGATGATGTAATTGTAATTGACAGTGATGATGAAGATGATGATGAAGAAAATGATGGCGAACATGAAGATTATGAAGAAGACGAAGATGATGATGATGATGAAGAAGATGACACGGGGATGGGAGATGAGGGTGAAGATAGTAATGAAGGAACTGGTAGTGCAGATGGTAATGATGGATATGAAGCTGATGATGCTGAGGGTGGTGATGGGACTGATCCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGCTGAAAGTCATCAGAGAGCTGCTGATTCTCAAAACAGTGGTGAAGGAAATACAAGTGCAGCAGAGTCTTCCTTCTCTCAGGAGGTTGCCAGGGAACAGCAGCCCACGTCAGCGTCTGAGAGACAGACTCCGCAAGCACCGCAGTCACCAAGGCGCCCTCCACATCCTCTCCCCCCACGCCTGACCATTCACGCCCCACCTCAGGAGCTGGGACCACCAGTTCAGGCTCCAGAACAGCAAAGACAAATCACACTGAAAACCACTCCAGCTTCTGGTGAAAGAGGAATTGCCAGCACATCAGACCCACCAACAGCCAATATCAAGCCAACTCCTGTTGTTTCTACTCCAAGTAAAGTGACAGCTGCAGCTATGGCTGGGAATAAGTCGACACCCAGGGCAAGTATCCGCCCAATGGTTACACCTGCAACGGTCACAAATCCGACCACTACCCCAACAGCAACCGTAATGCCTACTACACAGGTGGAGTCACAGGAAGCTATGCAGTCAGAAGGGCCTGTGGAACATGTTCCAGTATTTGGAAACGCAAGTGGATCTGTTCGTTCTACTAGTCCTAATGTTCAGCCCTCCATTTCTCAGCCCATCCTAACTGTACAGCAGCAAACACAAGCTACAGCTTTTGTACAACCCACTCAACAGAGCCACCCGCAGATTGAGCCTACAAATCAAGAATTGTCCCCAAACATAGTTGAGGTAGTACAAAGTTCCCCAGTGGAGCGTCCATCTACTTCCACAGCAGTATTTGGCACTGTTTCAGCTACCCCAAGTTCCTCCTTGCCAAAGCGCACTCGGGAGGAGGAAGAGGACAGCACCATGGAAGCAGGAGACCAAGTCTCTGAGGACACAGTGGAAATGCCTCTCCCGAAGAAGCTGAAGATGGTCACACCCGTTGGAACCGAGGAAGAAGTTATGGCAGAAGAAAGTACTGATGGAGAGGCAGAAACTCAAGCCTATAATCAGGACTCTCAAGATTCCATTGGAGAAGGAGTTACCCAGGGAGATTATACACCAATGGAAGACAGTGAAGAAACATCACAATCTCTACAAATCGATCTTGGACCACTTCAGTCAGATCAACAGACTACTTCCTCTCAAGATGGTCAAGGCAAAGGAGATGATGTAATTGTAATTGACAGTGATGATGAAGATGATGATGAAGAAAATGATGGCGAACATGAAGATTATGAAGAAGACGAAGATGATGATGATGATGAAGAAGATGACACGGGGATGGGAGATGAGGGTGAAGATAGTAATGAAGGAACTGGTAGTGCAGATGGTAATGATGGATATGAAGCTGATGATGCTGAGGGTGGTGATGGGACTGATCCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGCTGAAAGTCATCAGAGAGCTGCTGATTCTCAAAACAGTGGTGAAGGAAATACAAGTGCAGCAGAGTCTTCCTTCTCTCAGGAGGTTGCCAGGGAACAGCAGCCCACGTCAGCGTCTGAGAGACAGACTCCGCAAGCACCGCAGTCACCAAGGCGCCCTCCACATCCTCTCCCCCCACGCCTGACCATTCACGCCCCACCTCAGGAGCTGGGACCACCAGTTCAG
Peptide sequence:
MAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVESQEAMQSEGPVEHVPVFGNASGSVRSTSPNVQPSISQPILTVQQQTQATAFVQPTQQSHPQIEPTNQELSPNIVEVVQSSPVERPSTSTAVFGTVSATPSSSLPKRTREEEEDSTMEAGDQVSEDTVEMPLPKKLKMVTPVGTEEEVMAEESTDGEAETQAYNQDSQDSIGEGVTQGDYTPMEDSEETSQSLQIDLGPLQSDQQTTSSQDGQGKGDDVIVIDSDDEDDDEENDGEHEDYEEDEDDDDDEEDDTGMGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGAESHQRAADSQNSGEGNTSAAESSFSQEVAREQQPTSASERQTPQAPQSPRRPPHPLPPRLTIHAPPQELGPPVQAPEQQRQITLKTTPASGERGIASTSDPPTANIKPTPVVSTPSKVTAAAMAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVESQEAMQSEGPVEHVPVFGNASGSVRSTSPNVQPSISQPILTVQQQTQATAFVQPTQQSHPQIEPTNQELSPNIVEVVQSSPVERPSTSTAVFGTVSATPSSSLPKRTREEEEDSTMEAGDQVSEDTVEMPLPKKLKMVTPVGTEEEVMAEESTDGEAETQAYNQDSQDSIGEGVTQGDYTPMEDSEETSQSLQIDLGPLQSDQQTTSSQDGQGKGDDVIVIDSDDEDDDEENDGEHEDYEEDEDDDDDEEDDTGMGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGAESHQRAADSQNSGEGNTSAAESSFSQEVAREQQPTSASERQTPQAPQSPRRPPHPLPPRLTIHAPPQELGPPVQ
IRESfinder result
IRESfinder score
0.369042362
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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