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mmu_circTmem181c-ps_781
Basic information of circular RNA
PanCircBase ID:
mmu_circTmem181c-ps_781
mm39_Chr. Position ID:
chr17|6881151|6889636|-
Gene name:
Tmem181c-ps
Transcript:
ENSMUST00000115772.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
16,15,14,13,12,11,10,9,8,7
Exon/intron offsets:
0,308,1481,3324,3782,5355,6535,6793,7448,8463
Genomic length:
8485
Exon/intron sizes in nt:
67,90,83,52,103,58,92,131,83,22
Flanking exon/introns:
None|chr17:6889636-6891001
Splice length:
781
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGCCTGTTTGTACATTCCCTGCCCTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTCTGTCCTCCTGGCCCTGCTGCTGCTCTACAATGACCCTTTCTTCCCACTCTCCTTCTTGGTGAATAGCTGGTTCCCGGGGATGCTGGACGACTTCTTCCAGTCTCTGTTCCTGTGTGCCCTGCTGCTCTTCTGGCTGTGCGTGTATCATGGGATACGGGTCCAGGGAGAGAGAAAATGTTTAACTTTCTATTTGCCTAAGTTCTTCATTGTTGGACTGCTGTGGCTGGCTTCTGTCACGCTGGGAATATGGCAGACATTTAATGAATTAAATGATCCCATGTACCAGTATCGGGTTGACACCGGAAACTTTCAGGGCATGAAGGTCTTCTTCATGGTGGTGGCCGCTGTGTACATTTTATACCTTCTATTCTTGATAGTGCGAGCATGCTCTGAGCTCCGTCATATGCCTTACGTGGATCTCAGGTTAAAGTTTTTGACTGCATTGACCTTTGTAGTGCTAGTTATTAGCATCGTCATCCTCTACCTACGGTTTGGAGCACAAGTGTTGCAGGACAACTTCGTAGCAGAACTGTCGGCTCACTACCAGAACTCAGCTGAATTCCTGTCTTTCTATGGCCTGTTGAACTTTTACTTGTACACGCTGGCCTTTGTGTACTCTCCGTCGAAGAATGCCCTGTACGAGTCCCAGCTGAAGGATAACCCTGCGTTTTCCATGTTGAACGACTCTGACGATGACGTGATTTACGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACGAGTCCCAGCTGAAGGA
59.96
ATCCACTTCTGCTCGATGCC
60.18
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTACGAGTCCCAGCTGAAGG
59.83
ATCCACTTCTGCTCGATGCC
60.18
142
PCR template sequence:
TTGTGTACTCTCCGTCGAAGAATGCCCTGTACGAGTCCCAGCTGAAGGATAACCCTGCGTTTTCCATGTTGAACGACTCTGACGATGACGTGATTTACGGTGCCTGTTTGTACATTCCCTGCCCTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTCTGTCCTCCTGGCCCTGCTGCTGCTCTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-214-3p(3), mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-205-5p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-324-5p(1), mmu-miR-181b-5p(1), mmu-miR-382-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACGTGATTTACGGTGCCTGTTTGTAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTMEM181C-PS_781_ORF_1
1.1468
0.206233168
0.978603327
849
ORF sequence:
ATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTCTGTCCTCCTGGCCCTGCTGCTGCTCTACAATGACCCTTTCTTCCCACTCTCCTTCTTGGTGAATAGCTGGTTCCCGGGGATGCTGGACGACTTCTTCCAGTCTCTGTTCCTGTGTGCCCTGCTGCTCTTCTGGCTGTGCGTGTATCATGGGATACGGGTCCAGGGAGAGAGAAAATGTTTAACTTTCTATTTGCCTAAGTTCTTCATTGTTGGACTGCTGTGGCTGGCTTCTGTCACGCTGGGAATATGGCAGACATTTAATGAATTAAATGATCCCATGTACCAGTATCGGGTTGACACCGGAAACTTTCAGGGCATGAAGGTCTTCTTCATGGTGGTGGCCGCTGTGTACATTTTATACCTTCTATTCTTGATAGTGCGAGCATGCTCTGAGCTCCGTCATATGCCTTACGTGGATCTCAGGTTAAAGTTTTTGACTGCATTGACCTTTGTAGTGCTAGTTATTAGCATCGTCATCCTCTACCTACGGTTTGGAGCACAAGTGTTGCAGGACAACTTCGTAGCAGAACTGTCGGCTCACTACCAGAACTCAGCTGAATTCCTGTCTTTCTATGGCCTGTTGAACTTTTACTTGTACACGCTGGCCTTTGTGTACTCTCCGTCGAAGAATGCCCTGTACGAGTCCCAGCTGAAGGATAACCCTGCGTTTTCCATGTTGAACGACTCTGACGATGACGTGATTTACGGTGCCTGTTTGTACATTCCCTGCCCTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTCTGTCCTCCTGGCCCTGCTGCTGCTCTACAATGA
Peptide sequence:
MRDWGIEQKWMSVLLALLLLYNDPFFPLSFLVNSWFPGMLDDFFQSLFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQTFNELNDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIVILYLRFGAQVLQDNFVAELSAHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGACLYIPCPAQVLHEGLGHRAEVDVCPPGPAAALQ
IRESfinder result
IRESfinder score
0.658904111
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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