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mmu_circTmem131_663

Basic information of circular RNA
PanCircBase ID:

mmu_circTmem131_663

mm39_Chr. Position ID:

chr1|36854535|36858296|-

Gene name:

Tmem131

Transcript:

ENSMUST00000027290.12

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

6

Exon/intron indexes:

25,24,23,22,21,20

Exon/intron offsets:

0,432,654,3203,3438,3608

Genomic length:

3761

Exon/intron sizes in nt:

6,71,10,13,91,18,76,150

Flanking exon/introns:

chr1:36851789-36854535|chr1:36858296-36862147

Splice length:

663

Other database IDs:

CIRCpedia: MMU_CIRCpedia_18215, circAtlas: mmu-Tmem131_0016

Human Ortholog IDs:
Mature spliced Sequence:

GGGAAAATAGTTCATCAGAGCTTAAATATTATGAATTCCTTCTCACAGAAGGTGAAGATACAGCAAATAAGGTCTTTGTCAGAAGACGTACGATTCTACTACAAACGATTACGGGGTAATAGGGAAGACTTGGAGCCAGGGAAGAAGTCTAAGATTGCAAACATTTATTTTGACCCTGGGCTGCAGTGTGGGGATCACTGCTATATCGGCTTGCCTTTCCTATCCAAATCTGAACCCAAAGTACAGCCTGGGGTGGCCATGCAGGAGGACTTGTGGGATGCCGACTGGGACGCACATCAGAGCTTGTTCAAGGCTTGGATGGGGATAAAGGAAAACGCAGGACATAGGTTGAATGCTATGTTTGAAGTAAATACAGATCTTCAGAAAAATATCGTATCAAAAGTCAGTGCCGAGCTCTCCTGGCCGTCTGTCCTTAGCTCGCCCCGGCTCCTGAAGTTCCCACTCACTAACACAAACTGTTCTTCGGAAGAAGAGATTAGCTTAGAAAACCCTGCAGACGTCCCTGTCTACGTCCAGTTCATCCCACTGGCTTTGTATTCCAACCCCTCCGTCTTTGCAGATAAGTTAGTCTCAAGGTTTAACTTGAGTAAGGTGGCCAAGCTAGATTTGAGAACACTTGAATTCCAAGTCTACAGGAACAGC

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCCCTCCGTCTTTGCAGATA

59.17

TGCTGTATCTTCACCTTCTGTG

58.07

165

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TTGAGTAAGGTGGCCAAGCT

59.23

TCGTACGTCTTCTGACAAAGA

56.75

153

PCR template sequence:

CCCCTCCGTCTTTGCAGATAAGTTAGTCTCAAGGTTTAACTTGAGTAAGGTGGCCAAGCTAGATTTGAGAACACTTGAATTCCAAGTCTACAGGAACAGCGGGAAAATAGTTCATCAGAGCTTAAATATTATGAATTCCTTCTCACAGAAGGTGAAGATACAGCAAATAAGGTCTTTGTCAGAAGACGTACGATTCTACT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-210-3p(1), mmu-miR-324-5p(1), mmu-miR-149-5p(1)

siRNAs for circular RNA silencing
Junction sequence

CTACAGGAACAGCGGGAAAATAGTTC

siRNA sets

TTTCCCGCTGTTCCTGTAG, TATTTTCCCGCTGTTCCTG, ACTATTTTCCCGCTGTTCC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCTMEM131_663_ORF_1

0.993

0.150983047

0.998560742

1296

ORF sequence:

ATGAATTCCTTCTCACAGAAGGTGAAGATACAGCAAATAAGGTCTTTGTCAGAAGACGTACGATTCTACTACAAACGATTACGGGGTAATAGGGAAGACTTGGAGCCAGGGAAGAAGTCTAAGATTGCAAACATTTATTTTGACCCTGGGCTGCAGTGTGGGGATCACTGCTATATCGGCTTGCCTTTCCTATCCAAATCTGAACCCAAAGTACAGCCTGGGGTGGCCATGCAGGAGGACTTGTGGGATGCCGACTGGGACGCACATCAGAGCTTGTTCAAGGCTTGGATGGGGATAAAGGAAAACGCAGGACATAGGTTGAATGCTATGTTTGAAGTAAATACAGATCTTCAGAAAAATATCGTATCAAAAGTCAGTGCCGAGCTCTCCTGGCCGTCTGTCCTTAGCTCGCCCCGGCTCCTGAAGTTCCCACTCACTAACACAAACTGTTCTTCGGAAGAAGAGATTAGCTTAGAAAACCCTGCAGACGTCCCTGTCTACGTCCAGTTCATCCCACTGGCTTTGTATTCCAACCCCTCCGTCTTTGCAGATAAGTTAGTCTCAAGGTTTAACTTGAGTAAGGTGGCCAAGCTAGATTTGAGAACACTTGAATTCCAAGTCTACAGGAACAGCGGGAAAATAGTTCATCAGAGCTTAAATATTATGAATTCCTTCTCACAGAAGGTGAAGATACAGCAAATAAGGTCTTTGTCAGAAGACGTACGATTCTACTACAAACGATTACGGGGTAATAGGGAAGACTTGGAGCCAGGGAAGAAGTCTAAGATTGCAAACATTTATTTTGACCCTGGGCTGCAGTGTGGGGATCACTGCTATATCGGCTTGCCTTTCCTATCCAAATCTGAACCCAAAGTACAGCCTGGGGTGGCCATGCAGGAGGACTTGTGGGATGCCGACTGGGACGCACATCAGAGCTTGTTCAAGGCTTGGATGGGGATAAAGGAAAACGCAGGACATAGGTTGAATGCTATGTTTGAAGTAAATACAGATCTTCAGAAAAATATCGTATCAAAAGTCAGTGCCGAGCTCTCCTGGCCGTCTGTCCTTAGCTCGCCCCGGCTCCTGAAGTTCCCACTCACTAACACAAACTGTTCTTCGGAAGAAGAGATTAGCTTAGAAAACCCTGCAGACGTCCCTGTCTACGTCCAGTTCATCCCACTGGCTTTGTATTCCAACCCCTCCGTCTTTGCAGATAAGTTAGTCTCAAGGTTTAACTTGAGTAAGGTGGCCAAGCTAGATTTGAGAACACTTGAATTCCAAGTCTACAGGAACAGC

Peptide sequence:

MNSFSQKVKIQQIRSLSEDVRFYYKRLRGNREDLEPGKKSKIANIYFDPGLQCGDHCYIGLPFLSKSEPKVQPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSWPSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFNLSKVAKLDLRTLEFQVYRNSGKIVHQSLNIMNSFSQKVKIQQIRSLSEDVRFYYKRLRGNREDLEPGKKSKIANIYFDPGLQCGDHCYIGLPFLSKSEPKVQPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSWPSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFNLSKVAKLDLRTLEFQVYRNS

IRESfinder result

IRESfinder score

0.660404942

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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