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mmu_circTerf2_127
Basic information of circular RNA
PanCircBase ID:
mmu_circTerf2_127
mm39_Chr. Position ID:
chr8|107798506|107799277|-
Gene name:
Terf2
Transcript:
ENSMUST00000133925.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
9,8
Exon/intron offsets:
0,685
Genomic length:
771
Exon/intron sizes in nt:
41,86
Flanking exon/introns:
chr8:107797197-107798506|chr8:107799277-107803241
Splice length:
127
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_162207
Human Ortholog IDs:
Mature spliced Sequence:
AGCATCCAAAGACAAGTGGAACAGCCCTAACGGGCTTGAAGAAAAGGAAGTTTGGTTGGAAGAGGACCAGCTGTTTGAAGTTCAGGCACCAGGTGAAGACAGGTCATCCAGTTTAACAAGAAAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTGTTTGAAGTTCAGGC
60
TCCAACCAAACTTCCTTTTCTTCA
58.98
121
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTGTTTGAAGTTCAGGC
60
TCTTCCAACCAAACTTCCTTTTCT
58.73
124
PCR template sequence:
GACCAGCTGTTTGAAGTTCAGGCACCAGGTGAAGACAGGTCATCCAGTTTAACAAGAAAGCAGAGCATCCAAAGACAAGTGGAACAGCCCTAACGGGCTTGAAGAAAAGGAAGTTTGGTTGGAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-544-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AACAAGAAAGCAGAGCATCCAAAGAC
siRNA sets
CTTTGGATGCTCTGCTTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.610356084
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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