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mmu_circTelo2_531
Basic information of circular RNA
PanCircBase ID:
mmu_circTelo2_531
mm39_Chr. Position ID:
chr17|25325962|25330158|-
Gene name:
Telo2
Transcript:
ENSMUST00000115181.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
8,7,6,5,4
Exon/intron offsets:
0,338,3238,3718,4127
Genomic length:
4196
Exon/intron sizes in nt:
142,69,103,148,69
Flanking exon/introns:
chr17:25325882-25325962|chr17:25330158-25331953
Splice length:
531
Other database IDs:
CIRCpedia: MMU_CIRCpedia_14388, circAtlas: mmu-Telo2_0008
Human Ortholog IDs:
Mature spliced Sequence:
ATGGCCTAGACTGCTCTGTCTCCTTCGTATCTCGAGTTCTTGGGAAGGTCTGCATCCAGGGCCGAAAGAGAGAGATCCTGAGTGTGCTGGTGCCCCAGCTGACAGTGCTCACCCAGGACAGCTGTCTGTGGCAGCGGGTGTGCTGGCGCCTGGTGGAGCAGGTGCCTGACCGGGCAGTGGAGGCTGTGCTGACAGGACTTGTAGAGGCTGCTCCCAGGCCTGAAGTCCTGTCACGACTACTAGGGAACCTGGTGGTGAAGAATAAGAAAGCGCGGTTTGTGGTTACCCGCAAGCTCCTGCTCCTGCAGTACCAGCACACGACACCCATGGTGCAGAGCCTGTTGGGGTACTTGGCTCTAGACAGTCAGCGGCGGCCACTCCTCATACAGGTGCTTAAGGAGCTGCTGGAGACCTGGGGCTGCAGCAGTGCTGTCCGACACACACCCCTGGAGCAGCAGTGTTACATCAGCAAGGCCATCCTTGTCTGCCTGGCACACCTCGGGGAGCCGGAGCTGCAGGACATCCGGGATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGGAGCAGCAGTGTTACA
59.96
CTCTCTTTCGGCCCTGGATG
60.18
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGGAGCAGCAGTGTTACA
59.96
TCTCTCTTTCGGCCCTGGAT
60.33
159
PCR template sequence:
GTCCGACACACACCCCTGGAGCAGCAGTGTTACATCAGCAAGGCCATCCTTGTCTGCCTGGCACACCTCGGGGAGCCGGAGCTGCAGGACATCCGGGATGATGGCCTAGACTGCTCTGTCTCCTTCGTATCTCGAGTTCTTGGGAAGGTCTGCATCCAGGGCCGAAAGAGAGAGATCCTGAGTGTGCTGGTGCCCCAGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-141-3p(1), mmu-miR-138-5p(1), mmu-miR-411-3p(1), mmu-miR-324-3p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
GACATCCGGGATGATGGCCTAGACTG
siRNA sets
CAGTCTAGGCCATCATCCC, AGTCTAGGCCATCATCCCG, GTCTAGGCCATCATCCCGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTELO2_531_ORF_1
1.3134
0.431226768
0.985819866
735
ORF sequence:
ATGGTGCAGAGCCTGTTGGGGTACTTGGCTCTAGACAGTCAGCGGCGGCCACTCCTCATACAGGTGCTTAAGGAGCTGCTGGAGACCTGGGGCTGCAGCAGTGCTGTCCGACACACACCCCTGGAGCAGCAGTGTTACATCAGCAAGGCCATCCTTGTCTGCCTGGCACACCTCGGGGAGCCGGAGCTGCAGGACATCCGGGATGATGGCCTAGACTGCTCTGTCTCCTTCGTATCTCGAGTTCTTGGGAAGGTCTGCATCCAGGGCCGAAAGAGAGAGATCCTGAGTGTGCTGGTGCCCCAGCTGACAGTGCTCACCCAGGACAGCTGTCTGTGGCAGCGGGTGTGCTGGCGCCTGGTGGAGCAGGTGCCTGACCGGGCAGTGGAGGCTGTGCTGACAGGACTTGTAGAGGCTGCTCCCAGGCCTGAAGTCCTGTCACGACTACTAGGGAACCTGGTGGTGAAGAATAAGAAAGCGCGGTTTGTGGTTACCCGCAAGCTCCTGCTCCTGCAGTACCAGCACACGACACCCATGGTGCAGAGCCTGTTGGGGTACTTGGCTCTAGACAGTCAGCGGCGGCCACTCCTCATACAGGTGCTTAAGGAGCTGCTGGAGACCTGGGGCTGCAGCAGTGCTGTCCGACACACACCCCTGGAGCAGCAGTGTTACATCAGCAAGGCCATCCTTGTCTGCCTGGCACACCTCGGGGAGCCGGAGCTGCAGGACATCCGGGAT
Peptide sequence:
MVQSLLGYLALDSQRRPLLIQVLKELLETWGCSSAVRHTPLEQQCYISKAILVCLAHLGEPELQDIRDDGLDCSVSFVSRVLGKVCIQGRKREILSVLVPQLTVLTQDSCLWQRVCWRLVEQVPDRAVEAVLTGLVEAAPRPEVLSRLLGNLVVKNKKARFVVTRKLLLLQYQHTTPMVQSLLGYLALDSQRRPLLIQVLKELLETWGCSSAVRHTPLEQQCYISKAILVCLAHLGEPELQDIRD
IRESfinder result
IRESfinder score
0.414079688
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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