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mmu_circTecpr2_738

Basic information of circular RNA
PanCircBase ID:

mmu_circTecpr2_738

mm39_Chr. Position ID:

chr12|110904624|110911319|+

Gene name:

Tecpr2

Transcript:

ENSMUST00000165978.3

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

11,12,13,14

Exon/intron offsets:

0,1566,3262,6454

Genomic length:

6695

Exon/intron sizes in nt:

1,74,18,11,42,241

Flanking exon/introns:

chr12:110902893-110904624|chr12:110911319-110912755

Splice length:

738

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCAGGCTGTGTTTGTGGCCCTGAGTGATGACACAGCCTGGATCATCAGGACCAACGGAGATCTGTACCTTCAGACAGGTCTCAGTGTGGATCGGCCCTGCGCCCGAGCCGTGAAGGTGGACTGTCCATACCCACTGTCCCAGATCGCAGCCCGGAACAGTGTGGTGTGGGCACTGACAGAGCAGAGGGCCCTCCTGTACCGGGAGGGTGTGAGCAGCTTCTGTCCTGAGGGGGAGCAGTGGAAGTGTGACATTGTCAGTGAAAGGCAAACTCTGGAGCCTGTCTGCATAACTCTTGGAGATCAGCACACACTCTGGGCCCTGGACATTCACGGGAAGCTGTGGTTCAGAACTGGCGTGGTTCCCAAAAAGCCCCAAGGAGATGATGATCACTGGTGGCAGGTGAGCATCACGGACTATGTGGTGTTTGACCAGTGCAGCTTGTTCCAGACCATCATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GCCCAGCCTACTAGGGGTTA

60.4

GCTTCCCCTTGATGGTGACT

59.67

161

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCCCAGCCTACTAGGGGTTA

60.4

ATGGTGACTTTGCCACAAGC

59.32

150

PCR template sequence:

CAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAGGGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

6

Interacting miRNAs (#binding sites)

mmu-miR-574-5p(2), mmu-miR-136-5p(1), mmu-miR-351-5p(1), mmu-miR-127-5p(1), mmu-miR-212-3p(1), mmu-miR-670-5p(1)

siRNAs for circular RNA silencing
Junction sequence

GGAAGTCTCATAGGGGCTCTTCTCTG

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCTECPR2_738_ORF_1

0.9401

0.28422957

0.9866211

924

ORF sequence:

ATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAGGGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCAGGCTGTGTTTGTGGCCCTGAGTGATGACACAGCCTGGATCATCAGGACCAACGGAGATCTGTACCTTCAGACAGGTCTCAGTGTGGATCGGCCCTGCGCCCGAGCCGTGAAGGTGGACTGTCCATACCCACTGTCCCAGATCGCAGCCCGGAACAGTGTGGTGTGGGCACTGACAGAGCAGAGGGCCCTCCTGTACCGGGAGGGTGTGAGCAGCTTCTGTCCTGAGGGGGAGCAGTGGAAGTGTGACATTGTCAGTGAAAGGCAAACTCTGGAGCCTGTCTGCATAACTCTTGGAGATCAGCACACACTCTGGGCCCTGGACATTCACGGGAAGCTGTGGTTCAGAACTGGCGTGGTTCCCAAAAAGCCCCAAGGAGATGATGATCACTGGTGGCAGGTGAGCATCACGGACTATGTGGTGTTTGACCAGTGCAGCTTGTTCCAGACCATCATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATA

Peptide sequence:

MHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLIGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPYPLSQIAARNSVVWALTEQRALLYREGVSSFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQTIMHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLI

IRESfinder result

IRESfinder score

0.557219985

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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