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mmu_circTecpr2_738
Basic information of circular RNA
PanCircBase ID:
mmu_circTecpr2_738
mm39_Chr. Position ID:
chr12|110904624|110911319|+
Gene name:
Tecpr2
Transcript:
ENSMUST00000165978.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
11,12,13,14
Exon/intron offsets:
0,1566,3262,6454
Genomic length:
6695
Exon/intron sizes in nt:
1,74,18,11,42,241
Flanking exon/introns:
chr12:110902893-110904624|chr12:110911319-110912755
Splice length:
738
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCAGGCTGTGTTTGTGGCCCTGAGTGATGACACAGCCTGGATCATCAGGACCAACGGAGATCTGTACCTTCAGACAGGTCTCAGTGTGGATCGGCCCTGCGCCCGAGCCGTGAAGGTGGACTGTCCATACCCACTGTCCCAGATCGCAGCCCGGAACAGTGTGGTGTGGGCACTGACAGAGCAGAGGGCCCTCCTGTACCGGGAGGGTGTGAGCAGCTTCTGTCCTGAGGGGGAGCAGTGGAAGTGTGACATTGTCAGTGAAAGGCAAACTCTGGAGCCTGTCTGCATAACTCTTGGAGATCAGCACACACTCTGGGCCCTGGACATTCACGGGAAGCTGTGGTTCAGAACTGGCGTGGTTCCCAAAAAGCCCCAAGGAGATGATGATCACTGGTGGCAGGTGAGCATCACGGACTATGTGGTGTTTGACCAGTGCAGCTTGTTCCAGACCATCATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCAGCCTACTAGGGGTTA
60.4
GCTTCCCCTTGATGGTGACT
59.67
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCAGCCTACTAGGGGTTA
60.4
ATGGTGACTTTGCCACAAGC
59.32
150
PCR template sequence:
CAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAGGGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-574-5p(2), mmu-miR-136-5p(1), mmu-miR-351-5p(1), mmu-miR-127-5p(1), mmu-miR-212-3p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAAGTCTCATAGGGGCTCTTCTCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTECPR2_738_ORF_1
0.9401
0.28422957
0.9866211
924
ORF sequence:
ATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAGGGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTTTGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCAGGCTGTGTTTGTGGCCCTGAGTGATGACACAGCCTGGATCATCAGGACCAACGGAGATCTGTACCTTCAGACAGGTCTCAGTGTGGATCGGCCCTGCGCCCGAGCCGTGAAGGTGGACTGTCCATACCCACTGTCCCAGATCGCAGCCCGGAACAGTGTGGTGTGGGCACTGACAGAGCAGAGGGCCCTCCTGTACCGGGAGGGTGTGAGCAGCTTCTGTCCTGAGGGGGAGCAGTGGAAGTGTGACATTGTCAGTGAAAGGCAAACTCTGGAGCCTGTCTGCATAACTCTTGGAGATCAGCACACACTCTGGGCCCTGGACATTCACGGGAAGCTGTGGTTCAGAACTGGCGTGGTTCCCAAAAAGCCCCAAGGAGATGATGATCACTGGTGGCAGGTGAGCATCACGGACTATGTGGTGTTTGACCAGTGCAGCTTGTTCCAGACCATCATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGGTCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAACAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATA
Peptide sequence:
MHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLIGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPYPLSQIAARNSVVWALTEQRALLYREGVSSFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQTIMHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLI
IRESfinder result
IRESfinder score
0.557219985
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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