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mmu_circTbl2_307
Basic information of circular RNA
PanCircBase ID:
mmu_circTbl2_307
mm39_Chr. Position ID:
chr5|135181788|135183352|+
Gene name:
Tbl2
Transcript:
ENSMUST00000153183.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,1379
Genomic length:
1564
Exon/intron sizes in nt:
1,22,185
Flanking exon/introns:
chr5:135178718-135181788|chr5:135183352-135185221
Splice length:
307
Other database IDs:
circAtlas: hsa-TBL2_0004
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGAAAGAAAACGAACCCAAGAAGTCAGGATCCAAGAAGCAGAAGCAGAATCAGCGGGTTCGTAAGGAGAAGCCTCAGCAGCACAGCTTCACGCACCCCCTTCTGGCTGCAGCACTGAAGAGCCACAGTGGGAATATATCTTGCATGGACTTCAGCAGCAACGGCAAGTATCTGGCCACCTGTGCGGATGACCGCACTGTCCGTATCTGGAGCACTAAAGATTTCCTTCAGCGGGAGCACCGCAGCATGAGAGCCAACGTGGAGCTGGACCATGCCACCTTGGTACGCTTCAGCCCTGACTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGAGAGCCAACGTGGAGC
60.08
CTGTGCTGCTGAGGCTTCT
60
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGAGAGCCAACGTGGAGC
60.08
TGTGCTGCTGAGGCTTCTC
60
146
PCR template sequence:
TCTGGAGCACTAAAGATTTCCTTCAGCGGGAGCACCGCAGCATGAGAGCCAACGTGGAGCTGGACCATGCCACCTTGGTACGCTTCAGCCCTGACTGCAGGTCAGAAAGAAAACGAACCCAAGAAGTCAGGATCCAAGAAGCAGAAGCAGAATCAGCGGGTTCGTAAGGAGAAGCCTCAGCAGCACAGCTTCACGCACCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-342-5p(1), mmu-miR-207(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GCCCTGACTGCAGGTCAGAAAGAAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTBL2_307_ORF_1
0.9303
0.439762329
0.671916505
339
ORF sequence:
ATGCCACCTTGGTACGCTTCAGCCCTGACTGCAGGTCAGAAAGAAAACGAACCCAAGAAGTCAGGATCCAAGAAGCAGAAGCAGAATCAGCGGGTTCGTAAGGAGAAGCCTCAGCAGCACAGCTTCACGCACCCCCTTCTGGCTGCAGCACTGAAGAGCCACAGTGGGAATATATCTTGCATGGACTTCAGCAGCAACGGCAAGTATCTGGCCACCTGTGCGGATGACCGCACTGTCCGTATCTGGAGCACTAAAGATTTCCTTCAGCGGGAGCACCGCAGCATGAGAGCCAACGTGGAGCTGGACCATGCCACCTTGGTACGCTTCAGCCCTGACTGC
Peptide sequence:
MPPWYASALTAGQKENEPKKSGSKKQKQNQRVRKEKPQQHSFTHPLLAAALKSHSGNISCMDFSSNGKYLATCADDRTVRIWSTKDFLQREHRSMRANVELDHATLVRFSPDC
IRESfinder result
IRESfinder score
0.305234994
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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