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mmu_circTbc1d8_2193
Basic information of circular RNA
PanCircBase ID:
mmu_circTbc1d8_2193
mm39_Chr. Position ID:
chr1|39415504|39442004|-
Gene name:
Tbc1d8
Transcript:
ENSMUST00000054462.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
17,16,15,14,13,12,11,10,9,8,7,6,5
Exon/intron offsets:
0,454,3031,3571,3804,4853,8697,9574,12884,14693,15633,17641,26259
Genomic length:
26500
Exon/intron sizes in nt:
6,62,41,69,99,13,02,86,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:39413252-39415504|chr1:39442004-39444371
Splice length:
2193
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_92488
Human Ortholog IDs:
Mature spliced Sequence:
TTAAACTTGTGATCCCCTGGGTCGATATCCAGAAGCTGGAGCGAACCTCCAATGTCTTTCTCACGGACACCATCCGGATCACTACACAGAATAAGGAGCGAGACTTCTCCACGTTTCTGAACCTGGACGAGGTGTTCAAGATCATGGAGCAGCTGGCAGATGTCACGCTCCGGAGGCTGCTGGACAACGAGGTTTTTGATCTTGACCCCGACCTGCAGGAGCCTAGCCAGATCACAAAGAGGGACCTGGAGGCCAGAGCACAGAACGAGTTCTTCCGGGCTTTCTTCAGGCTGCCGAGGGAGGAGAAGCTGCACGCTGTGGCAGACTGTTCCCTCTGGACGCCCTTCAGTCGCTGCCACACAGCCGGACGGATATTCTCCTCTGACAGCTACATCTGCTTTGCCAGCAGAGAGGATGGCTGCTGTAATGTTGTGCTTCCCCTGAGAGAGGTAGTGAGCATTGAGAAGATGGAAGACACGAGCCTGCTGCCCAACCCCATCATCGTGAGCATCCGCAGCAAGATGGCCTTCCAGTTCATTGAGCTCAAGGACAGAGAGAACTTGGTGGAGGGCCTGCTGCTGAGACTGAAGCAGGTCCACGCCAACCACCCTGTGCACTATGAGACCTCGCCAAGTGATGATGACATGGCTTCACCTGTGTTTTACTCAGCAAGCATCTGCACTGACAAGTTTGGGGATCTTGAGATGGTGGCTTCTCAAAGTAGCGAAGAGAGAGAGGAGAAGCGCCCCCTGCCACACCCCGAGCCCCTGACTGCCGTCTTCCAGCAGTCTGGCAGCCAGAGCCCCGACTCCCGCCTGTCCCGGGAACAGATAAAAATCAGTCTGTGGAACGACCACTTTGTAGAGTACGGCAGGACCGTGTGCATGTTCCGCACTGAAAAGATCCGGAAGCTGGTGGCCATGGGGATCCCCGAGTCGTTACGTGGAAGGCTGTGGCTGCTTTTCTCAGATGCTGTGACGGACCTGGCCTCACACCCTGGGTACTATGGGAATCTGGTGGAGCAGTCTCTGGGGCGCTGCTGCCTGGTGACAGAGGAGATAGAGAGGGACCTGCACCGCTCTCTCCCTGAGCACCCCGCCTTCCAGAATGAAACTGGCATTGCTGCCTTGAGGCGGGTGCTGACAGCGTATGCCCACCGGAACCCCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCTGTGTTGCTGCTGTATGCCAAAGAGGAGGAAGCCTTCTGGCTGCTGGTCGCTGTGTGTGAGCGGATGCTGCCTGATTACTTCAACCACCGGGTGATTGGGGCTCAGGTGGACCAGTCTGTGTTTGAGGAGCTCATCAAGGAGCAACTCCCAGAGCTGGCGGAGCACATGAGCGACCTCTCGGCGTTAGCGTCCATCTCCCTCTCCTGGTTCCTGACTCTGTTCCTCAGCATCATGCCGCTGGAGAGTGCTGTGCACGTCGTTGACTGCTTCTTCTACGATGGGATCAAGGCCATCTTCCAGCTGGGGCTGGCTGTGCTGGAAGCCAATGCAGAGGAACTGTGCAGTAGCAAAGATGACGGACAGGCCCTGATGGTCCTCAGCAGGTTTCTAGATCACATTAAGAATGAAGACAGCCCGGGGCCCCCCATTGGCAGCCACCATGCCTTTTTCTCTGATGATCAGGAGCCATATCCTGTGACCGACATTGCTGACCTGATCCGGGACTCCTATGAGAAATTTGGAAACCAGTCTGTGGAGCAGATTGAACATCTACGCTGCAAGCACAGGATCAGGGTCCTGCAAGGACACGAGGACACCACCAAGCAGAATGTGCTCCGTGTCGTTATCCCAGAAGTCTCCATTCTTCCTGAAGACCTTGAGGAACTCTATGACTTATTCAAGAGAGCACACATGATGAGCTGTTACTGGGAGCACCACAGGCCCATGGCCCTGCGCCATGATCCCAGCAGGCCCTATGCTGAACAGTACCGCATCGATGCCCGGCAGTTTGCACACCTATTCCAGTTGGTATCGCCATGGACCTGTGGGGTCCATACAGAGATCCTTGCTGAGAGGCTCTTCAGGCTTCTGGACGACAACATGGACCAGCTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGAGAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAAAGCCTTCACAAGCTGTC
59.05
AGACATTGGAGGTTCGCTCC
59.75
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAAGCCTTCACAAGCTGTCT
59.05
AGACATTGGAGGTTCGCTCC
59.75
146
PCR template sequence:
CTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGAGAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCAGTTAAACTTGTGATCCCCTGGGTCGATATCCAGAAGCTGGAGCGAACCTCCAATGTCTTTCTCACGGACACCATCCGGATCACTACACAGAATAAGGAGCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-370-3p(2), mmu-miR-207(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-132-3p(1), mmu-miR-326-3p(1), mmu-miR-185-5p(1), mmu-miR-503-5p(1), mmu-miR-136-5p(1), mmu-miR-363-3p(1), mmu-miR-212-3p(1), mmu-miR-194-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-802-5p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-673-5p(1), mmu-miR-484(1), mmu-miR-452-3p(1), mmu-miR-1199-5p(1), mmu-miR-323-3p(1), mmu-miR-296-3p(1), mmu-miR-376a-3p(1), mmu-miR-344-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATATCCCCCCAGTTAAACTTGTGAT
siRNA sets
CACAAGTTTAACTGGGGGG, TCACAAGTTTAACTGGGGG, ATCACAAGTTTAACTGGGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTBC1D8_2193_ORF_1
1.3124
0.443584751
1
4242
ORF sequence:
ATGGAGCAGCTGGCAGATGTCACGCTCCGGAGGCTGCTGGACAACGAGGTTTTTGATCTTGACCCCGACCTGCAGGAGCCTAGCCAGATCACAAAGAGGGACCTGGAGGCCAGAGCACAGAACGAGTTCTTCCGGGCTTTCTTCAGGCTGCCGAGGGAGGAGAAGCTGCACGCTGTGGCAGACTGTTCCCTCTGGACGCCCTTCAGTCGCTGCCACACAGCCGGACGGATATTCTCCTCTGACAGCTACATCTGCTTTGCCAGCAGAGAGGATGGCTGCTGTAATGTTGTGCTTCCCCTGAGAGAGGTAGTGAGCATTGAGAAGATGGAAGACACGAGCCTGCTGCCCAACCCCATCATCGTGAGCATCCGCAGCAAGATGGCCTTCCAGTTCATTGAGCTCAAGGACAGAGAGAACTTGGTGGAGGGCCTGCTGCTGAGACTGAAGCAGGTCCACGCCAACCACCCTGTGCACTATGAGACCTCGCCAAGTGATGATGACATGGCTTCACCTGTGTTTTACTCAGCAAGCATCTGCACTGACAAGTTTGGGGATCTTGAGATGGTGGCTTCTCAAAGTAGCGAAGAGAGAGAGGAGAAGCGCCCCCTGCCACACCCCGAGCCCCTGACTGCCGTCTTCCAGCAGTCTGGCAGCCAGAGCCCCGACTCCCGCCTGTCCCGGGAACAGATAAAAATCAGTCTGTGGAACGACCACTTTGTAGAGTACGGCAGGACCGTGTGCATGTTCCGCACTGAAAAGATCCGGAAGCTGGTGGCCATGGGGATCCCCGAGTCGTTACGTGGAAGGCTGTGGCTGCTTTTCTCAGATGCTGTGACGGACCTGGCCTCACACCCTGGGTACTATGGGAATCTGGTGGAGCAGTCTCTGGGGCGCTGCTGCCTGGTGACAGAGGAGATAGAGAGGGACCTGCACCGCTCTCTCCCTGAGCACCCCGCCTTCCAGAATGAAACTGGCATTGCTGCCTTGAGGCGGGTGCTGACAGCGTATGCCCACCGGAACCCCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCTGTGTTGCTGCTGTATGCCAAAGAGGAGGAAGCCTTCTGGCTGCTGGTCGCTGTGTGTGAGCGGATGCTGCCTGATTACTTCAACCACCGGGTGATTGGGGCTCAGGTGGACCAGTCTGTGTTTGAGGAGCTCATCAAGGAGCAACTCCCAGAGCTGGCGGAGCACATGAGCGACCTCTCGGCGTTAGCGTCCATCTCCCTCTCCTGGTTCCTGACTCTGTTCCTCAGCATCATGCCGCTGGAGAGTGCTGTGCACGTCGTTGACTGCTTCTTCTACGATGGGATCAAGGCCATCTTCCAGCTGGGGCTGGCTGTGCTGGAAGCCAATGCAGAGGAACTGTGCAGTAGCAAAGATGACGGACAGGCCCTGATGGTCCTCAGCAGGTTTCTAGATCACATTAAGAATGAAGACAGCCCGGGGCCCCCCATTGGCAGCCACCATGCCTTTTTCTCTGATGATCAGGAGCCATATCCTGTGACCGACATTGCTGACCTGATCCGGGACTCCTATGAGAAATTTGGAAACCAGTCTGTGGAGCAGATTGAACATCTACGCTGCAAGCACAGGATCAGGGTCCTGCAAGGACACGAGGACACCACCAAGCAGAATGTGCTCCGTGTCGTTATCCCAGAAGTCTCCATTCTTCCTGAAGACCTTGAGGAACTCTATGACTTATTCAAGAGAGCACACATGATGAGCTGTTACTGGGAGCACCACAGGCCCATGGCCCTGCGCCATGATCCCAGCAGGCCCTATGCTGAACAGTACCGCATCGATGCCCGGCAGTTTGCACACCTATTCCAGTTGGTATCGCCATGGACCTGTGGGGTCCATACAGAGATCCTTGCTGAGAGGCTCTTCAGGCTTCTGGACGACAACATGGACCAGCTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGAGAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCAGTTAAACTTGTGATCCCCTGGGTCGATATCCAGAAGCTGGAGCGAACCTCCAATGTCTTTCTCACGGACACCATCCGGATCACTACACAGAATAAGGAGCGAGACTTCTCCACGTTTCTGAACCTGGACGAGGTGTTCAAGATCATGGAGCAGCTGGCAGATGTCACGCTCCGGAGGCTGCTGGACAACGAGGTTTTTGATCTTGACCCCGACCTGCAGGAGCCTAGCCAGATCACAAAGAGGGACCTGGAGGCCAGAGCACAGAACGAGTTCTTCCGGGCTTTCTTCAGGCTGCCGAGGGAGGAGAAGCTGCACGCTGTGGCAGACTGTTCCCTCTGGACGCCCTTCAGTCGCTGCCACACAGCCGGACGGATATTCTCCTCTGACAGCTACATCTGCTTTGCCAGCAGAGAGGATGGCTGCTGTAATGTTGTGCTTCCCCTGAGAGAGGTAGTGAGCATTGAGAAGATGGAAGACACGAGCCTGCTGCCCAACCCCATCATCGTGAGCATCCGCAGCAAGATGGCCTTCCAGTTCATTGAGCTCAAGGACAGAGAGAACTTGGTGGAGGGCCTGCTGCTGAGACTGAAGCAGGTCCACGCCAACCACCCTGTGCACTATGAGACCTCGCCAAGTGATGATGACATGGCTTCACCTGTGTTTTACTCAGCAAGCATCTGCACTGACAAGTTTGGGGATCTTGAGATGGTGGCTTCTCAAAGTAGCGAAGAGAGAGAGGAGAAGCGCCCCCTGCCACACCCCGAGCCCCTGACTGCCGTCTTCCAGCAGTCTGGCAGCCAGAGCCCCGACTCCCGCCTGTCCCGGGAACAGATAAAAATCAGTCTGTGGAACGACCACTTTGTAGAGTACGGCAGGACCGTGTGCATGTTCCGCACTGAAAAGATCCGGAAGCTGGTGGCCATGGGGATCCCCGAGTCGTTACGTGGAAGGCTGTGGCTGCTTTTCTCAGATGCTGTGACGGACCTGGCCTCACACCCTGGGTACTATGGGAATCTGGTGGAGCAGTCTCTGGGGCGCTGCTGCCTGGTGACAGAGGAGATAGAGAGGGACCTGCACCGCTCTCTCCCTGAGCACCCCGCCTTCCAGAATGAAACTGGCATTGCTGCCTTGAGGCGGGTGCTGACAGCGTATGCCCACCGGAACCCCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCTGTGTTGCTGCTGTATGCCAAAGAGGAGGAAGCCTTCTGGCTGCTGGTCGCTGTGTGTGAGCGGATGCTGCCTGATTACTTCAACCACCGGGTGATTGGGGCTCAGGTGGACCAGTCTGTGTTTGAGGAGCTCATCAAGGAGCAACTCCCAGAGCTGGCGGAGCACATGAGCGACCTCTCGGCGTTAGCGTCCATCTCCCTCTCCTGGTTCCTGACTCTGTTCCTCAGCATCATGCCGCTGGAGAGTGCTGTGCACGTCGTTGACTGCTTCTTCTACGATGGGATCAAGGCCATCTTCCAGCTGGGGCTGGCTGTGCTGGAAGCCAATGCAGAGGAACTGTGCAGTAGCAAAGATGACGGACAGGCCCTGATGGTCCTCAGCAGGTTTCTAGATCACATTAAGAATGAAGACAGCCCGGGGCCCCCCATTGGCAGCCACCATGCCTTTTTCTCTGATGATCAGGAGCCATATCCTGTGACCGACATTGCTGACCTGATCCGGGACTCCTATGAGAAATTTGGAAACCAGTCTGTGGAGCAGATTGAACATCTACGCTGCAAGCACAGGATCAGGGTCCTGCAAGGACACGAGGACACCACCAAGCAGAATGTGCTCCGTGTCGTTATCCCAGAAGTCTCCATTCTTCCTGAAGACCTTGAGGAACTCTATGACTTATTCAAGAGAGCACACATGATGAGCTGTTACTGGGAGCACCACAGGCCCATGGCCCTGCGCCATGATCCCAGCAGGCCCTATGCTGAACAGTACCGCATCGATGCCCGGCAGTTTGCACACCTATTCCAGTTGGTATCGCCATGGACCTGTGGGGTCCATACAGAGATCCTTGCTGAGAGGCTCTTCAGGCTTCTGGACGACAACATGGACCAGCTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGAGAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCA
Peptide sequence:
MEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEARAQNEFFRAFFRLPREEKLHAVADCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCNVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVFYSASICTDKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSREQIKISLWNDHFVEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFEELIKEQLPELAEHMSDLSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVLEANAEELCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYEKFGNQSVEQIEHLRCKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMALRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGVHTEILAERLFRLLDDNMDQLIEFKAFTSCLDIMYNGEMNEKIKLLYRLHIPPVKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEARAQNEFFRAFFRLPREEKLHAVADCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCNVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVFYSASICTDKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSREQIKISLWNDHFVEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFEELIKEQLPELAEHMSDLSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVLEANAEELCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYEKFGNQSVEQIEHLRCKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMALRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGVHTEILAERLFRLLDDNMDQLIEFKAFTSCLDIMYNGEMNEKIKLLYRLHIPP
IRESfinder result
IRESfinder score
0.390943371
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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