top of page
mmu_circTbc1d23_365
Basic information of circular RNA
PanCircBase ID:
mmu_circTbc1d23_365
mm39_Chr. Position ID:
chr16|56993386|57003353|-
Gene name:
Tbc1d23
Transcript:
ENSMUST00000023431.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
16,15,14
Exon/intron offsets:
0,4908,9827
Genomic length:
9967
Exon/intron sizes in nt:
1,36,89,140
Flanking exon/introns:
chr16:56992180-56993386|chr16:57003353-57004742
Splice length:
365
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_159398
Human Ortholog IDs:
Mature spliced Sequence:
GGTGAATCCTGTAATGGCTCCAATGATAGAGGAATGAAATCCCTGGTCAGTAAAATGACTGTGGCTCTAAAGACAAAATCCGTTACCGTTAGGGAAAAGGTCATCAGCTTTATTGAGAACTCGTCGACTCCTGTGGACCGGCACGTGAGCAGCAGCGACAGAGTGGGCAAGCCTTACCGTGGAGTGAAGCCTGTGTTCAGCATCGGCGATGAAGAGGAATATGACACAGATGAAATCGACAGCTCGTCCATGTCAGATGATGATAGGAAAGAGGTTGTCAACATCCAGACCTGGATCAACAAGCCGGACATCAAGCATCACTTTCCCTGTAAAGAAGTTAAAGAAAGTGGACATATGTTTCCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCCGGACATCAAGCATCA
60.04
CGGATTTTGTCTTTAGAGCCACA
59.25
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCCGGACATCAAGCATCA
60.04
ACGGATTTTGTCTTTAGAGCCAC
59.25
148
PCR template sequence:
GGAAAGAGGTTGTCAACATCCAGACCTGGATCAACAAGCCGGACATCAAGCATCACTTTCCCTGTAAAGAAGTTAAAGAAAGTGGACATATGTTTCCTAGGGTGAATCCTGTAATGGCTCCAATGATAGAGGAATGAAATCCCTGGTCAGTAAAATGACTGTGGCTCTAAAGACAAAATCCGTTACCGTTAGGGAAAAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ATATGTTTCCTAGGGTGAATCCTGTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTBC1D23_365_ORF_1
1.2686
0.357555514
0.772712268
369
ORF sequence:
ATGAAATCCCTGGTCAGTAAAATGACTGTGGCTCTAAAGACAAAATCCGTTACCGTTAGGGAAAAGGTCATCAGCTTTATTGAGAACTCGTCGACTCCTGTGGACCGGCACGTGAGCAGCAGCGACAGAGTGGGCAAGCCTTACCGTGGAGTGAAGCCTGTGTTCAGCATCGGCGATGAAGAGGAATATGACACAGATGAAATCGACAGCTCGTCCATGTCAGATGATGATAGGAAAGAGGTTGTCAACATCCAGACCTGGATCAACAAGCCGGACATCAAGCATCACTTTCCCTGTAAAGAAGTTAAAGAAAGTGGACATATGTTTCCTAGGGTGAATCCTGTAATGGCTCCAATGATAGAGGAATGA
Peptide sequence:
MKSLVSKMTVALKTKSVTVREKVISFIENSSTPVDRHVSSSDRVGKPYRGVKPVFSIGDEEEYDTDEIDSSSMSDDDRKEVVNIQTWINKPDIKHHFPCKEVKESGHMFPRVNPVMAPMIEE
IRESfinder result
IRESfinder score
0.306132722
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page