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mmu_circTasor_4125
Basic information of circular RNA
PanCircBase ID:
mmu_circTasor_4125
mm39_Chr. Position ID:
chr14|27160555|27202048|+
Gene name:
Tasor
Transcript:
ENSMUST00000022450.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
22
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23
Exon/intron offsets:
0,1552,2831,3288,3860,7786,8892,9556,11158,11347,21180,21342,22485,25447,27568,28907,33019,37096,37939,38513,41030,41325
Genomic length:
41493
Exon/intron sizes in nt:
14,69,37,39,21,62,12,50,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr14:27151341-27160555|chr14:27202048-27202598
Splice length:
4125
Other database IDs:
circBase: mmu_circ_0005150, CIRCpedia: MMU_CIRCpedia_14943, circAtlas: mmu-Fam208a_0005
circBase: hsa_circ_0124298, circAtlas: hsa-FAM208A_0005, CIRCpedia: HSA_CIRCpedia_17781
Human Ortholog IDs:
Mature spliced Sequence:
CTCTTTTCCAGCCATTAACTCCAGGGTCTCGAGAATTTGAAGATGTTTTAAATATTCTCCATTCATCTTACCTTGAACCATCATCAGTAACATATTTTAACTATAGACGAGCTTGCTTGATACATAATGAACTTTTGGAAAAAGAGTTTACAGAAAAGAGAAGAGAATTGAAGTTTGATGGTCGTTTAGATAAGGAACTTTCAGAATCTTATGCATTTCTCATGGTTGATCGGTACCAGGTTCAGAGCATATGTGAAAAAGGATTGCAGGTGGGCCAATCCAAAATAACAGTTCTTGGCAGTCCTTCCATGGGTATCTATCTTTGTAGGTATGCAGATCTCTTACAGGCTAATCCTTTGGAGGCTGGGGCAGTAGGCGATGTTGTTATTTTTAAAATCATGAAGGGTAAAATAAAGAGTATTTATGACCCTCTCAGTGTAAAAAGCTTGGAATCCATGTTAAGTAAAAATGCTTTGGACCCTACCCCAAAACATGAATGTCATGTGTCTAAAAATGCCAGTAGAATTACATCCCTCTTGGCATATAGAGCCTATGAGCTTACTCAGTATTATTTTTATGAGTATGGCTTTGATGAAGTAAGACGAAGACCAAGACATGTTTGTCCGTATGCAGTTGTGTCTTTTACTTACAAAGATGATGTACAAACTCCAAAGTTTTTGTCTCCATTGAGATCTAACAGCTTTAATGCAGATAGAAACATAGATAAGTTTAACTATACCTTGTGGAAAGGACAACTTTTAAATAAAGGAAAGCTTCTCTGTTATATTTCTTTGAGGTCCGCCAATCGTGCCTTTCTACCTGTCAAGCTTCCTGAGAAATTGGATGTTGAAACAGTTATGAGTATTGATTGTTTGAAACAGAAAATTCCTCCTTCATTCTTTTATAAAGACACATATGTGGGTCCCAATGAAGTTTTAAAGAATGGAATGTATTGTAGCCTTTATGAAGTTGTAGAAAAGACAAGAATTGGAAGTAATATGGAATGTTTACTGCAAAAACTGGAGAAAGAAAAACTTGTTCTTGTTAAACCTTTAGGAGACCGAGGATACCTTTTTCTTCTTTCTCCTTTCCAGATGGTTTCTCCATATGAACATCAGACTGTCAAGTCACGAATCCTACATGCTTTATTTCTGTTTCAAGAACCTAGATGCCTAATTATCACACAAAAAGGTATAATGAATACAACACCACTGGAGAAGCCTGAGAACTTAGCAGATATATTAAAAATAACTCAGTTTTTACAGTTTTCTCTGATTCAATGTAGAAAAGAATTCAAAACTATAAACACTATAAATTTTCATTCTGTTGTTGAAAAGTATGTAAGTGAATTTTTTAAGCGAGGTTTTGGTTCGGGTAAGCGAGAGTTTTTTATGTTTTCATATGATTCACGATTAGATGATAGAAAATTCCTATACTCAGCACCAAGAAATAAATCCCATATTGATGACTGCTTACATACCTACATTTACCAGCCAGAAATGTATCAGTTGTCTATTTTTAAATTAAAAGAGTTATTTGAGGAAAATTGGAGACGCCAGCAGTTTAGTCCACTGTCAGATTATGAAGGTCAAGAAGAAGAACTGAATGGTTCAAAAATGAAATTTGGAAAACGGAATAATTCAAGGGATGAAACTACTGAACCTGAACAGCAGAAGTCGTCTCATTCTTTGGATTATGATAAAGATAGAGTCAAAGAGTTGATTAATTTAATTCAGTGTACAAAAAAAAATGTGGGTGGAGATCCAGATCCAGAAGATACAAAAAGCAAAAATGTCTTGAAGAGGAAGCTTGAAGATCTACCTGAAAATATGAGAAAGTTTGCCAAAACAAGTAATTCAACTGAAAGTTGCCATCTATATGAAGAATCTCCACAGTCCATTGGCTTACTTGGACAGGATCCTAACTTGAGAGTGCAGCAGGAAGATTCCGGGAACACTGGGGACATCCACAAGCTTTATAATTGGCTATCGGAAGCACTAGCAAATGCACGACACTCAGACGGATTCCTGACCGAGACAGTCAACAAGGCTTTAGGATTGAGTAGTAGTGGTGCCTATGAAGAGCTGAAGCAAAAATGTGATTATGAGTTGAACTCTACTTTAGATAAAAAAGAATCTGAGCAGCCTGCTTGTACAAAAATTGAAAATGTGCATTTTAAGGATGCTCAGAGCCCATTGCTAGAAGTGGATGCAGCATCTGTAAAGTATCCTCCTCTTCTGTCTAGCAGTGAGGATCCGAATTTAATTAATGTCAATAATTTTGAAGGGTGCAGTCTCTGTCCCACGGTTTCTATTGAGCATGGATTCCTTAGACAACATTCTAAGTCAAATGATGATGAAGAGACAGAAATACATTGGAAATTGATTCCAATTACAGGAGGGAATGCAGGAAGCCCAGAAGACCAGCATGGGAAACATGGTGAGAAACAAACACCAGGAATGAAATCACCAGGAGAACAGCTGGTGTGCCTGCCACCAGTGGAGGCCTTTCCTAATGATCCCCGGGTCATCAATAGAGAAAGAAGCTGTGATTACCAGTTCCCATCCTCTCCGTCTACAGACACTCTAAAAGGCACTACCGAGGAGGACACTGTAACAGCAGGTCAGGCGATGGCAGTGGAAGAGCAGTGTGTGCCAGCAGCAGAGCTTCCTAGAGTGAGCGAGATTACAGAAAATACAGTGTTAGGAGAGTTCCATCTTTTCTCTAGGAAGGTAGAAGAGATTTTGAAGGAGAAGAATGTTTCATATGTTAGTGCAATTTCCACACCTATCTTTTCAGCACAAGAGAAGATGAATCGCCTTTCTGAGTTCATACATTCTAATACTTCTAAAGCTGGTGTTGAGGAATTTGTAGATGGTTTGCATGAAAAACTAAATACTGTTGTTATTACAGCATCAGCTAAGGGTGTGAGTTTGCCGCCAGCAGTTAGCGCTAATCATTCCCATGCTGCAGCAGCATTGGCTTCTCTGGGAAGGCGTGTTGTGTCAATTTCCTCAAGTGACTTCAGTGCTAAAGAACTTTTTGAGCCGCTCTGTTCTGAACATTTAAAAGATAACAACTCTAATGAACAGTATTCCTCTTCAGTGGAAGTAGAAATGAATCGGCCACACCATTGCAAAGAGTTAATGTTGACTTCTGATCACACTGTACCTGGTGATACAGTCCTGGAACCCACAGAAAAAGAAATAACAAAATCACCCAGTGATATAACCATTTCTGCACAACCAGCACTTTCAAATTTTATAAGCCAGTTAGAACCTGAAGTATTTAATAGTTTGGTTAAAATCATGAAAGACGTCCAGAAAAATACTGTGAAGTTTTACATTCACGAAGAAGAGGAGAGTGTGCTTTGCAAAGAAATAAAGGAGTATCTTACCAAATTAGGAAATACAGAGTGTCATCCGGATCAGTTTTTGGAGAGAAGATCAAACTTGGATAAACTATTGATTATTATTCAAAATGAAGACATTGCAGGTTTCATTCACAAGGTGCCTGGCTTAGTGACTTTAAAGAAGCTCCCATGTGTTAGTTTTGCTGGTGTTGATAGCCTGGATGATGTTAAAAATCATACATACAACGAGTTATTTGTATCTGGTGGCTTTATTGTGTCTGATGAATCAATTCTAAATCTAGAGGTTGTCACAATTGAGAGCCTTAAAATTTTTTTGACATTCCTTGAAGAACTTAGTACTCCAGAAGGGAAATGGCAATGGAAAATCCACTGTAAATTCCAGAAGAAACTAAAGGAACTGGGCAGAATGAACACGAAAGCTCTGAGTCTGCTGACTCTTCTGAATGTGTATCAGAAGAAACATCTGGTTGAGATTTTGTCTTATCACAGTTGTGATTCACAAACTCGAAATGCTCCAGAAATGGACTGCCTTATTAGGCTTCAGGCTCAGAACATACAGCAGCGACACATAGTCTTTCTAACAGAGAAGAATATCAAGATGGTTTCCAGTTATACAGACAATGGAATTGTCGTTGCAACTACTGAAGACTTTATGCAAAACTTTACAAGTCTTGTGGGCTATCACAACTCAGTTACAGAAGAAAGTCTTCCGCCGCTGCTTGGTGCTAATGAGAACCTTGAGTCCCAGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGAAAGTCTTCCGCCGCT
60.67
TGTTACTGATGATGGTTCAAGGT
57.76
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAAAGTCTTCCGCCGCTG
60.95
TGTTACTGATGATGGTTCAAGGT
57.76
146
PCR template sequence:
ATGCAAAACTTTACAAGTCTTGTGGGCTATCACAACTCAGTTACAGAAGAAAGTCTTCCGCCGCTGCTTGGTGCTAATGAGAACCTTGAGTCCCAGTCAGCTCTTTTCCAGCCATTAACTCCAGGGTCTCGAGAATTTGAAGATGTTTTAAATATTCTCCATTCATCTTACCTTGAACCATCATCAGTAACATATTTTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
42
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(2), mmu-miR-7a-5p(2), mmu-miR-181b-5p(2), mmu-miR-224-5p(2), mmu-miR-129-5p(2), mmu-miR-1904(2), mmu-miR-181d-5p(2), mmu-miR-20b-5p(1), mmu-miR-140-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-199a-5p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-miR-30e-5p(1), mmu-miR-106b-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-18a-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-138-5p(1), mmu-miR-30d-5p(1), mmu-miR-503-5p(1), mmu-miR-30b-5p(1), mmu-miR-434-3p(1), mmu-miR-127-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-410-3p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-369-3p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
GAGTCCCAGTCAGCTCTTTTCCAGCC
siRNA sets
TGGAAAAGAGCTGACTGGG,GAAAAGAGCTGACTGGGAC,CTGGAAAAGAGCTGACTGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTASOR_4125_ORF_1
1.0377
-0.016138303
1
8028
ORF sequence:
ATGGTTGATCGGTACCAGGTTCAGAGCATATGTGAAAAAGGATTGCAGGTGGGCCAATCCAAAATAACAGTTCTTGGCAGTCCTTCCATGGGTATCTATCTTTGTAGGTATGCAGATCTCTTACAGGCTAATCCTTTGGAGGCTGGGGCAGTAGGCGATGTTGTTATTTTTAAAATCATGAAGGGTAAAATAAAGAGTATTTATGACCCTCTCAGTGTAAAAAGCTTGGAATCCATGTTAAGTAAAAATGCTTTGGACCCTACCCCAAAACATGAATGTCATGTGTCTAAAAATGCCAGTAGAATTACATCCCTCTTGGCATATAGAGCCTATGAGCTTACTCAGTATTATTTTTATGAGTATGGCTTTGATGAAGTAAGACGAAGACCAAGACATGTTTGTCCGTATGCAGTTGTGTCTTTTACTTACAAAGATGATGTACAAACTCCAAAGTTTTTGTCTCCATTGAGATCTAACAGCTTTAATGCAGATAGAAACATAGATAAGTTTAACTATACCTTGTGGAAAGGACAACTTTTAAATAAAGGAAAGCTTCTCTGTTATATTTCTTTGAGGTCCGCCAATCGTGCCTTTCTACCTGTCAAGCTTCCTGAGAAATTGGATGTTGAAACAGTTATGAGTATTGATTGTTTGAAACAGAAAATTCCTCCTTCATTCTTTTATAAAGACACATATGTGGGTCCCAATGAAGTTTTAAAGAATGGAATGTATTGTAGCCTTTATGAAGTTGTAGAAAAGACAAGAATTGGAAGTAATATGGAATGTTTACTGCAAAAACTGGAGAAAGAAAAACTTGTTCTTGTTAAACCTTTAGGAGACCGAGGATACCTTTTTCTTCTTTCTCCTTTCCAGATGGTTTCTCCATATGAACATCAGACTGTCAAGTCACGAATCCTACATGCTTTATTTCTGTTTCAAGAACCTAGATGCCTAATTATCACACAAAAAGGTATAATGAATACAACACCACTGGAGAAGCCTGAGAACTTAGCAGATATATTAAAAATAACTCAGTTTTTACAGTTTTCTCTGATTCAATGTAGAAAAGAATTCAAAACTATAAACACTATAAATTTTCATTCTGTTGTTGAAAAGTATGTAAGTGAATTTTTTAAGCGAGGTTTTGGTTCGGGTAAGCGAGAGTTTTTTATGTTTTCATATGATTCACGATTAGATGATAGAAAATTCCTATACTCAGCACCAAGAAATAAATCCCATATTGATGACTGCTTACATACCTACATTTACCAGCCAGAAATGTATCAGTTGTCTATTTTTAAATTAAAAGAGTTATTTGAGGAAAATTGGAGACGCCAGCAGTTTAGTCCACTGTCAGATTATGAAGGTCAAGAAGAAGAACTGAATGGTTCAAAAATGAAATTTGGAAAACGGAATAATTCAAGGGATGAAACTACTGAACCTGAACAGCAGAAGTCGTCTCATTCTTTGGATTATGATAAAGATAGAGTCAAAGAGTTGATTAATTTAATTCAGTGTACAAAAAAAAATGTGGGTGGAGATCCAGATCCAGAAGATACAAAAAGCAAAAATGTCTTGAAGAGGAAGCTTGAAGATCTACCTGAAAATATGAGAAAGTTTGCCAAAACAAGTAATTCAACTGAAAGTTGCCATCTATATGAAGAATCTCCACAGTCCATTGGCTTACTTGGACAGGATCCTAACTTGAGAGTGCAGCAGGAAGATTCCGGGAACACTGGGGACATCCACAAGCTTTATAATTGGCTATCGGAAGCACTAGCAAATGCACGACACTCAGACGGATTCCTGACCGAGACAGTCAACAAGGCTTTAGGATTGAGTAGTAGTGGTGCCTATGAAGAGCTGAAGCAAAAATGTGATTATGAGTTGAACTCTACTTTAGATAAAAAAGAATCTGAGCAGCCTGCTTGTACAAAAATTGAAAATGTGCATTTTAAGGATGCTCAGAGCCCATTGCTAGAAGTGGATGCAGCATCTGTAAAGTATCCTCCTCTTCTGTCTAGCAGTGAGGATCCGAATTTAATTAATGTCAATAATTTTGAAGGGTGCAGTCTCTGTCCCACGGTTTCTATTGAGCATGGATTCCTTAGACAACATTCTAAGTCAAATGATGATGAAGAGACAGAAATACATTGGAAATTGATTCCAATTACAGGAGGGAATGCAGGAAGCCCAGAAGACCAGCATGGGAAACATGGTGAGAAACAAACACCAGGAATGAAATCACCAGGAGAACAGCTGGTGTGCCTGCCACCAGTGGAGGCCTTTCCTAATGATCCCCGGGTCATCAATAGAGAAAGAAGCTGTGATTACCAGTTCCCATCCTCTCCGTCTACAGACACTCTAAAAGGCACTACCGAGGAGGACACTGTAACAGCAGGTCAGGCGATGGCAGTGGAAGAGCAGTGTGTGCCAGCAGCAGAGCTTCCTAGAGTGAGCGAGATTACAGAAAATACAGTGTTAGGAGAGTTCCATCTTTTCTCTAGGAAGGTAGAAGAGATTTTGAAGGAGAAGAATGTTTCATATGTTAGTGCAATTTCCACACCTATCTTTTCAGCACAAGAGAAGATGAATCGCCTTTCTGAGTTCATACATTCTAATACTTCTAAAGCTGGTGTTGAGGAATTTGTAGATGGTTTGCATGAAAAACTAAATACTGTTGTTATTACAGCATCAGCTAAGGGTGTGAGTTTGCCGCCAGCAGTTAGCGCTAATCATTCCCATGCTGCAGCAGCATTGGCTTCTCTGGGAAGGCGTGTTGTGTCAATTTCCTCAAGTGACTTCAGTGCTAAAGAACTTTTTGAGCCGCTCTGTTCTGAACATTTAAAAGATAACAACTCTAATGAACAGTATTCCTCTTCAGTGGAAGTAGAAATGAATCGGCCACACCATTGCAAAGAGTTAATGTTGACTTCTGATCACACTGTACCTGGTGATACAGTCCTGGAACCCACAGAAAAAGAAATAACAAAATCACCCAGTGATATAACCATTTCTGCACAACCAGCACTTTCAAATTTTATAAGCCAGTTAGAACCTGAAGTATTTAATAGTTTGGTTAAAATCATGAAAGACGTCCAGAAAAATACTGTGAAGTTTTACATTCACGAAGAAGAGGAGAGTGTGCTTTGCAAAGAAATAAAGGAGTATCTTACCAAATTAGGAAATACAGAGTGTCATCCGGATCAGTTTTTGGAGAGAAGATCAAACTTGGATAAACTATTGATTATTATTCAAAATGAAGACATTGCAGGTTTCATTCACAAGGTGCCTGGCTTAGTGACTTTAAAGAAGCTCCCATGTGTTAGTTTTGCTGGTGTTGATAGCCTGGATGATGTTAAAAATCATACATACAACGAGTTATTTGTATCTGGTGGCTTTATTGTGTCTGATGAATCAATTCTAAATCTAGAGGTTGTCACAATTGAGAGCCTTAAAATTTTTTTGACATTCCTTGAAGAACTTAGTACTCCAGAAGGGAAATGGCAATGGAAAATCCACTGTAAATTCCAGAAGAAACTAAAGGAACTGGGCAGAATGAACACGAAAGCTCTGAGTCTGCTGACTCTTCTGAATGTGTATCAGAAGAAACATCTGGTTGAGATTTTGTCTTATCACAGTTGTGATTCACAAACTCGAAATGCTCCAGAAATGGACTGCCTTATTAGGCTTCAGGCTCAGAACATACAGCAGCGACACATAGTCTTTCTAACAGAGAAGAATATCAAGATGGTTTCCAGTTATACAGACAATGGAATTGTCGTTGCAACTACTGAAGACTTTATGCAAAACTTTACAAGTCTTGTGGGCTATCACAACTCAGTTACAGAAGAAAGTCTTCCGCCGCTGCTTGGTGCTAATGAGAACCTTGAGTCCCAGTCAGCTCTTTTCCAGCCATTAACTCCAGGGTCTCGAGAATTTGAAGATGTTTTAAATATTCTCCATTCATCTTACCTTGAACCATCATCAGTAACATATTTTAACTATAGACGAGCTTGCTTGATACATAATGAACTTTTGGAAAAAGAGTTTACAGAAAAGAGAAGAGAATTGAAGTTTGATGGTCGTTTAGATAAGGAACTTTCAGAATCTTATGCATTTCTCATGGTTGATCGGTACCAGGTTCAGAGCATATGTGAAAAAGGATTGCAGGTGGGCCAATCCAAAATAACAGTTCTTGGCAGTCCTTCCATGGGTATCTATCTTTGTAGGTATGCAGATCTCTTACAGGCTAATCCTTTGGAGGCTGGGGCAGTAGGCGATGTTGTTATTTTTAAAATCATGAAGGGTAAAATAAAGAGTATTTATGACCCTCTCAGTGTAAAAAGCTTGGAATCCATGTTAAGTAAAAATGCTTTGGACCCTACCCCAAAACATGAATGTCATGTGTCTAAAAATGCCAGTAGAATTACATCCCTCTTGGCATATAGAGCCTATGAGCTTACTCAGTATTATTTTTATGAGTATGGCTTTGATGAAGTAAGACGAAGACCAAGACATGTTTGTCCGTATGCAGTTGTGTCTTTTACTTACAAAGATGATGTACAAACTCCAAAGTTTTTGTCTCCATTGAGATCTAACAGCTTTAATGCAGATAGAAACATAGATAAGTTTAACTATACCTTGTGGAAAGGACAACTTTTAAATAAAGGAAAGCTTCTCTGTTATATTTCTTTGAGGTCCGCCAATCGTGCCTTTCTACCTGTCAAGCTTCCTGAGAAATTGGATGTTGAAACAGTTATGAGTATTGATTGTTTGAAACAGAAAATTCCTCCTTCATTCTTTTATAAAGACACATATGTGGGTCCCAATGAAGTTTTAAAGAATGGAATGTATTGTAGCCTTTATGAAGTTGTAGAAAAGACAAGAATTGGAAGTAATATGGAATGTTTACTGCAAAAACTGGAGAAAGAAAAACTTGTTCTTGTTAAACCTTTAGGAGACCGAGGATACCTTTTTCTTCTTTCTCCTTTCCAGATGGTTTCTCCATATGAACATCAGACTGTCAAGTCACGAATCCTACATGCTTTATTTCTGTTTCAAGAACCTAGATGCCTAATTATCACACAAAAAGGTATAATGAATACAACACCACTGGAGAAGCCTGAGAACTTAGCAGATATATTAAAAATAACTCAGTTTTTACAGTTTTCTCTGATTCAATGTAGAAAAGAATTCAAAACTATAAACACTATAAATTTTCATTCTGTTGTTGAAAAGTATGTAAGTGAATTTTTTAAGCGAGGTTTTGGTTCGGGTAAGCGAGAGTTTTTTATGTTTTCATATGATTCACGATTAGATGATAGAAAATTCCTATACTCAGCACCAAGAAATAAATCCCATATTGATGACTGCTTACATACCTACATTTACCAGCCAGAAATGTATCAGTTGTCTATTTTTAAATTAAAAGAGTTATTTGAGGAAAATTGGAGACGCCAGCAGTTTAGTCCACTGTCAGATTATGAAGGTCAAGAAGAAGAACTGAATGGTTCAAAAATGAAATTTGGAAAACGGAATAATTCAAGGGATGAAACTACTGAACCTGAACAGCAGAAGTCGTCTCATTCTTTGGATTATGATAAAGATAGAGTCAAAGAGTTGATTAATTTAATTCAGTGTACAAAAAAAAATGTGGGTGGAGATCCAGATCCAGAAGATACAAAAAGCAAAAATGTCTTGAAGAGGAAGCTTGAAGATCTACCTGAAAATATGAGAAAGTTTGCCAAAACAAGTAATTCAACTGAAAGTTGCCATCTATATGAAGAATCTCCACAGTCCATTGGCTTACTTGGACAGGATCCTAACTTGAGAGTGCAGCAGGAAGATTCCGGGAACACTGGGGACATCCACAAGCTTTATAATTGGCTATCGGAAGCACTAGCAAATGCACGACACTCAGACGGATTCCTGACCGAGACAGTCAACAAGGCTTTAGGATTGAGTAGTAGTGGTGCCTATGAAGAGCTGAAGCAAAAATGTGATTATGAGTTGAACTCTACTTTAGATAAAAAAGAATCTGAGCAGCCTGCTTGTACAAAAATTGAAAATGTGCATTTTAAGGATGCTCAGAGCCCATTGCTAGAAGTGGATGCAGCATCTGTAAAGTATCCTCCTCTTCTGTCTAGCAGTGAGGATCCGAATTTAATTAATGTCAATAATTTTGAAGGGTGCAGTCTCTGTCCCACGGTTTCTATTGAGCATGGATTCCTTAGACAACATTCTAAGTCAAATGATGATGAAGAGACAGAAATACATTGGAAATTGATTCCAATTACAGGAGGGAATGCAGGAAGCCCAGAAGACCAGCATGGGAAACATGGTGAGAAACAAACACCAGGAATGAAATCACCAGGAGAACAGCTGGTGTGCCTGCCACCAGTGGAGGCCTTTCCTAATGATCCCCGGGTCATCAATAGAGAAAGAAGCTGTGATTACCAGTTCCCATCCTCTCCGTCTACAGACACTCTAAAAGGCACTACCGAGGAGGACACTGTAACAGCAGGTCAGGCGATGGCAGTGGAAGAGCAGTGTGTGCCAGCAGCAGAGCTTCCTAGAGTGAGCGAGATTACAGAAAATACAGTGTTAGGAGAGTTCCATCTTTTCTCTAGGAAGGTAGAAGAGATTTTGAAGGAGAAGAATGTTTCATATGTTAGTGCAATTTCCACACCTATCTTTTCAGCACAAGAGAAGATGAATCGCCTTTCTGAGTTCATACATTCTAATACTTCTAAAGCTGGTGTTGAGGAATTTGTAGATGGTTTGCATGAAAAACTAAATACTGTTGTTATTACAGCATCAGCTAAGGGTGTGAGTTTGCCGCCAGCAGTTAGCGCTAATCATTCCCATGCTGCAGCAGCATTGGCTTCTCTGGGAAGGCGTGTTGTGTCAATTTCCTCAAGTGACTTCAGTGCTAAAGAACTTTTTGAGCCGCTCTGTTCTGAACATTTAAAAGATAACAACTCTAATGAACAGTATTCCTCTTCAGTGGAAGTAGAAATGAATCGGCCACACCATTGCAAAGAGTTAATGTTGACTTCTGATCACACTGTACCTGGTGATACAGTCCTGGAACCCACAGAAAAAGAAATAACAAAATCACCCAGTGATATAACCATTTCTGCACAACCAGCACTTTCAAATTTTATAAGCCAGTTAGAACCTGAAGTATTTAATAGTTTGGTTAAAATCATGAAAGACGTCCAGAAAAATACTGTGAAGTTTTACATTCACGAAGAAGAGGAGAGTGTGCTTTGCAAAGAAATAAAGGAGTATCTTACCAAATTAGGAAATACAGAGTGTCATCCGGATCAGTTTTTGGAGAGAAGATCAAACTTGGATAAACTATTGATTATTATTCAAAATGAAGACATTGCAGGTTTCATTCACAAGGTGCCTGGCTTAGTGACTTTAAAGAAGCTCCCATGTGTTAGTTTTGCTGGTGTTGATAGCCTGGATGATGTTAAAAATCATACATACAACGAGTTATTTGTATCTGGTGGCTTTATTGTGTCTGATGAATCAATTCTAAATCTAGAGGTTGTCACAATTGAGAGCCTTAAAATTTTTTTGACATTCCTTGAAGAACTTAGTACTCCAGAAGGGAAATGGCAATGGAAAATCCACTGTAAATTCCAGAAGAAACTAAAGGAACTGGGCAGAATGAACACGAAAGCTCTGAGTCTGCTGACTCTTCTGAATGTGTATCAGAAGAAACATCTGGTTGAGATTTTGTCTTATCACAGTTGTGATTCACAAACTCGAAATGCTCCAGAAATGGACTGCCTTATTAGGCTTCAGGCTCAGAACATACAGCAGCGACACATAGTCTTTCTAACAGAGAAGAATATCAAGATGGTTTCCAGTTATACAGACAATGGAATTGTCGTTGCAACTACTGAAGACTTTATGCAAAACTTTACAAGTCTTGTGGGCTATCACAACTCAGTTACAGAAGAAAGTCTTCCGCCGCTGCTTGGTGCTAATGAGAACCTTGAGTCCCAGTCA
Peptide sequence:
MVDRYQVQSICEKGLQVGQSKITVLGSPSMGIYLCRYADLLQANPLEAGAVGDVVIFKIMKGKIKSIYDPLSVKSLESMLSKNALDPTPKHECHVSKNASRITSLLAYRAYELTQYYFYEYGFDEVRRRPRHVCPYAVVSFTYKDDVQTPKFLSPLRSNSFNADRNIDKFNYTLWKGQLLNKGKLLCYISLRSANRAFLPVKLPEKLDVETVMSIDCLKQKIPPSFFYKDTYVGPNEVLKNGMYCSLYEVVEKTRIGSNMECLLQKLEKEKLVLVKPLGDRGYLFLLSPFQMVSPYEHQTVKSRILHALFLFQEPRCLIITQKGIMNTTPLEKPENLADILKITQFLQFSLIQCRKEFKTINTINFHSVVEKYVSEFFKRGFGSGKREFFMFSYDSRLDDRKFLYSAPRNKSHIDDCLHTYIYQPEMYQLSIFKLKELFEENWRRQQFSPLSDYEGQEEELNGSKMKFGKRNNSRDETTEPEQQKSSHSLDYDKDRVKELINLIQCTKKNVGGDPDPEDTKSKNVLKRKLEDLPENMRKFAKTSNSTESCHLYEESPQSIGLLGQDPNLRVQQEDSGNTGDIHKLYNWLSEALANARHSDGFLTETVNKALGLSSSGAYEELKQKCDYELNSTLDKKESEQPACTKIENVHFKDAQSPLLEVDAASVKYPPLLSSSEDPNLINVNNFEGCSLCPTVSIEHGFLRQHSKSNDDEETEIHWKLIPITGGNAGSPEDQHGKHGEKQTPGMKSPGEQLVCLPPVEAFPNDPRVINRERSCDYQFPSSPSTDTLKGTTEEDTVTAGQAMAVEEQCVPAAELPRVSEITENTVLGEFHLFSRKVEEILKEKNVSYVSAISTPIFSAQEKMNRLSEFIHSNTSKAGVEEFVDGLHEKLNTVVITASAKGVSLPPAVSANHSHAAAALASLGRRVVSISSSDFSAKELFEPLCSEHLKDNNSNEQYSSSVEVEMNRPHHCKELMLTSDHTVPGDTVLEPTEKEITKSPSDITISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLTKLGNTECHPDQFLERRSNLDKLLIIIQNEDIAGFIHKVPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNLEVVTIESLKIFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLNVYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNGIVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALFQPLTPGSREFEDVLNILHSSYLEPSSVTYFNYRRACLIHNELLEKEFTEKRRELKFDGRLDKELSESYAFLMVDRYQVQSICEKGLQVGQSKITVLGSPSMGIYLCRYADLLQANPLEAGAVGDVVIFKIMKGKIKSIYDPLSVKSLESMLSKNALDPTPKHECHVSKNASRITSLLAYRAYELTQYYFYEYGFDEVRRRPRHVCPYAVVSFTYKDDVQTPKFLSPLRSNSFNADRNIDKFNYTLWKGQLLNKGKLLCYISLRSANRAFLPVKLPEKLDVETVMSIDCLKQKIPPSFFYKDTYVGPNEVLKNGMYCSLYEVVEKTRIGSNMECLLQKLEKEKLVLVKPLGDRGYLFLLSPFQMVSPYEHQTVKSRILHALFLFQEPRCLIITQKGIMNTTPLEKPENLADILKITQFLQFSLIQCRKEFKTINTINFHSVVEKYVSEFFKRGFGSGKREFFMFSYDSRLDDRKFLYSAPRNKSHIDDCLHTYIYQPEMYQLSIFKLKELFEENWRRQQFSPLSDYEGQEEELNGSKMKFGKRNNSRDETTEPEQQKSSHSLDYDKDRVKELINLIQCTKKNVGGDPDPEDTKSKNVLKRKLEDLPENMRKFAKTSNSTESCHLYEESPQSIGLLGQDPNLRVQQEDSGNTGDIHKLYNWLSEALANARHSDGFLTETVNKALGLSSSGAYEELKQKCDYELNSTLDKKESEQPACTKIENVHFKDAQSPLLEVDAASVKYPPLLSSSEDPNLINVNNFEGCSLCPTVSIEHGFLRQHSKSNDDEETEIHWKLIPITGGNAGSPEDQHGKHGEKQTPGMKSPGEQLVCLPPVEAFPNDPRVINRERSCDYQFPSSPSTDTLKGTTEEDTVTAGQAMAVEEQCVPAAELPRVSEITENTVLGEFHLFSRKVEEILKEKNVSYVSAISTPIFSAQEKMNRLSEFIHSNTSKAGVEEFVDGLHEKLNTVVITASAKGVSLPPAVSANHSHAAAALASLGRRVVSISSSDFSAKELFEPLCSEHLKDNNSNEQYSSSVEVEMNRPHHCKELMLTSDHTVPGDTVLEPTEKEITKSPSDITISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLTKLGNTECHPDQFLERRSNLDKLLIIIQNEDIAGFIHKVPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNLEVVTIESLKIFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLNVYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNGIVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQS
IRESfinder result
IRESfinder score
0.791479307
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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