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mmu_circTaok2_204
Basic information of circular RNA
PanCircBase ID:
mmu_circTaok2_204
mm39_Chr. Position ID:
chr7|126471077|126471281|-
Gene name:
Taok2
Transcript:
ENSMUST00000071268.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
204
Exon/intron sizes in nt:
204
Flanking exon/introns:
chr7:126470813-126471077|chr7:126471281-126471368
Splice length:
204
Other database IDs:
CIRCpedia: MMU_CIRCpedia_212918, circAtlas: mmu-Taok2_0005
Human Ortholog IDs:
Mature spliced Sequence:
GAGCTCCAGGAGAACCCTAGCACACCCAAACGAGAGAAGGCTGAGTGGCTGTTGAGGCAAAAGGAGCAGTTGCAACAGTGCCAGGCAGAAGAGGAAGCGGGGCTGCTGCGGAGGCAGCGCCAGTACTTTGAACTTCAGTGTCGCCAATACAAGCGCAAGATGCTACTGGCTCGGCACAGCCTAGATCAGGACCTGCTTCGAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCGCCAGTACTTTGAAC
60.11
CCTTTTGCCTCAACAGCCAC
59.97
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCGCCAGTACTTTGAAC
60.11
AACAGCCACTCAGCCTTCTC
59.96
144
PCR template sequence:
GCTGCGGAGGCAGCGCCAGTACTTTGAACTTCAGTGTCGCCAATACAAGCGCAAGATGCTACTGGCTCGGCACAGCCTAGATCAGGACCTGCTTCGAGAGGAGCTCCAGGAGAACCCTAGCACACCCAAACGAGAGAAGGCTGAGTGGCTGTTGAGGCAAAAGGAGCAGTTGCAACAGTGCCAGGCAGAAGAGGAAGCGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCTGCTTCGAGAGGAGCTCCAGGAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTAOK2_204_ORF_1
1.2789
0.517879942
0.738830127
249
ORF sequence:
ATGCTACTGGCTCGGCACAGCCTAGATCAGGACCTGCTTCGAGAGGAGCTCCAGGAGAACCCTAGCACACCCAAACGAGAGAAGGCTGAGTGGCTGTTGAGGCAAAAGGAGCAGTTGCAACAGTGCCAGGCAGAAGAGGAAGCGGGGCTGCTGCGGAGGCAGCGCCAGTACTTTGAACTTCAGTGTCGCCAATACAAGCGCAAGATGCTACTGGCTCGGCACAGCCTAGATCAGGACCTGCTTCGAGAG
Peptide sequence:
MLLARHSLDQDLLREELQENPSTPKREKAEWLLRQKEQLQQCQAEEEAGLLRRQRQYFELQCRQYKRKMLLARHSLDQDLLRE
IRESfinder result
IRESfinder score
0.182603266
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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