top of page
mmu_circTanc2_749
Basic information of circular RNA
PanCircBase ID:
mmu_circTanc2_749
mm39_Chr. Position ID:
chr11|105777183|105792979|+
Gene name:
Tanc2
Transcript:
ENSMUST00000100330.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
14,15,16,17,18
Exon/intron offsets:
0,9488,10110,13326,15702
Genomic length:
15796
Exon/intron sizes in nt:
109,123,237,186,94
Flanking exon/introns:
chr11:105758600-105777183|chr11:105792979-105799820
Splice length:
749
Other database IDs:
CIRCpedia: MMU_CIRCpedia_1631, circAtlas: mmu-Tanc2_0011
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_143793
Human Ortholog IDs:
Mature spliced Sequence:
GAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTAGGACATCACATCCTCAAAGCACACATCTTTAAGGGTTTGAGTAAAAAGGTTGGTGTATCGTCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTTTCCATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAGGTCAGCAGACTGCTGATTCTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCTATCCTATGTGTCCAGTCTCACCTTGGATACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCTAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCCCTGGGGTATGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAGGTGGATCACTTGGATAAGAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCATCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCACGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAGATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGGAGCGAGCACAAATCA
59.96
GTGCTTTGAGGATGTGATGTCC
59.58
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGGAGCGAGCACAAATCA
59.96
TGCTTTGAGGATGTGATGTCC
58.28
147
PCR template sequence:
ACTGAGATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAGGAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTAGGACATCACATCCTCAAAGCACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(2), mmu-miR-199b-3p(2), mmu-miR-199a-3p(2), mmu-miR-107-3p(2), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-26b-5p(1), mmu-miR-370-3p(1), mmu-miR-1187(1)
siRNAs for circular RNA silencing
Junction sequence
TGGGGAGAGACAGGAGTGGCCACACA
siRNA sets
TGTGTGGCCACTCCTGTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTANC2_749_ORF_1
1.0698
0.240024998
0.893853685
615
ORF sequence:
ATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAGGTCAGCAGACTGCTGATTCTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCTATCCTATGTGTCCAGTCTCACCTTGGATACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCTAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCCCTGGGGTATGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAGGTGGATCACTTGGATAAGAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCATCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCACGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAGATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAGGAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAA
Peptide sequence:
MALASLRNLYTPNIKVSRLLILGGANINYRTEVLNNAPILCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLDKNGQCALVHAALRGHLEVVKFLIQCDWTMAGQQQGVFKKSHAIQQALIAAASMGYTEIVSYLLDLPEKDEEEVERAQINSFDSLWGETGVATHYLPSGSPAKREN
IRESfinder result
IRESfinder score
0.651408527
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page