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mmu_circTanc2_1205
Basic information of circular RNA
PanCircBase ID:
mmu_circTanc2_1205
mm39_Chr. Position ID:
chr11|105689386|105754909|+
Gene name:
Tanc2
Transcript:
ENSMUST00000100330.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
7,8,9,10,11,12
Exon/intron offsets:
0,11911,36388,42058,58836,65356
Genomic length:
65523
Exon/intron sizes in nt:
2,64,12,62,82,13,42,32,000
Flanking exon/introns:
chr11:105670951-105689386|chr11:105754909-105757992
Splice length:
1205
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAGCCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAGTTCGCTTTGCACCTTACAGACCTCCAGACATCTCCTTGAAGCCCCTACTCTTCGAAGTGCCCAGCATTACCACGGAGTCAGTGTTTGTTGGTCGAGATTGGGTATTCCATGAGATTGATGCTCAGCTTCAGAGTTCTAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGACAGCCCACACGCCTCCCCCAAACATGTGGACGCCAACAGAGAGCTACCACTCACCCAAGCACCTTCAGCTCACTCATCTATTACCAGTGGAAGCTGCCCAGGAACTCCAGAAATGCGCAGGCGGCAAGAGGAAGCCATGCGAAGACTTGCCTCACAGGTGGTTGCCTATCACTATTGCCAGGCAGATAATGCCTACACCTGCCTGGTACCAGAATTCGTCCACAATGTTGCTGCCCTGCTCTGCCGCTCACCTCAGCTGACAGCTTACCGGGAACAGCTTCTTCGGGAGCCTCACCTGCAGAGCATGCTAAGCCTCCGGTCCTGTGTTCAAGATCCCATGGCCTCCTTCCGGAGAGGAGTCCTAGAGCCCTTGGAGAACCTCCACAAAGAGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAATTTTCCTTCTTGGCTCA
57.13
GCCATGGTTTTAGGTTTCCTCC
59.5
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTTCCTTCTTGGCTCAAACT
55.07
GCCATGGTTTTAGGTTTCCTCC
59.5
144
PCR template sequence:
ACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAGCAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-429-3p(1), mmu-miR-375-3p(1), mmu-miR-200b-3p(1), mmu-miR-135a-5p(1), mmu-miR-200c-3p(1), mmu-miR-122-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-495-3p(1), mmu-miR-127-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-297a-5p(1), mmu-miR-27a-5p(1), mmu-miR-335-3p(1), mmu-miR-484(1), mmu-miR-3065-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACCAGTTTACAGCAACATTAACAAA
siRNA sets
TTAATGTTGCTGTAAACTG, ATGTTGCTGTAAACTGGTC, AATGTTGCTGTAAACTGGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTANC2_1205_ORF_1
0.7855
0.177660353
0.995767293
1188
ORF sequence:
ATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAGCCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAGTTCGCTTTGCACCTTACAGACCTCCAGACATCTCCTTGAAGCCCCTACTCTTCGAAGTGCCCAGCATTACCACGGAGTCAGTGTTTGTTGGTCGAGATTGGGTATTCCATGAGATTGATGCTCAGCTTCAGAGTTCTAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGACAGCCCACACGCCTCCCCCAAACATGTGGACGCCAACAGAGAGCTACCACTCACCCAAGCACCTTCAGCTCACTCATCTATTACCAGTGGAAGCTGCCCAGGAACTCCAGAAATGCGCAGGCGGCAAGAGGAAGCCATGCGAAGACTTGCCTCACAGGTGGTTGCCTATCACTATTGCCAGGCAGATAATGCCTACACCTGCCTGGTACCAGAATTCGTCCACAATGTTGCTGCCCTGCTCTGCCGCTCACCTCAGCTGACAGCTTACCGGGAACAGCTTCTTCGGGAGCCTCACCTGCAGAGCATGCTAAGCCTCCGGTCCTGTGTTCAAGATCCCATGGCCTCCTTCCGGAGAGGAGTCCTAGAGCCCTTGGAGAACCTCCACAAAGAGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAGCAACATTAA
Peptide sequence:
MERTKYVGEGSKELGSGGNLKPWQSQKSSMDSCLYRVDENMAASTYSLNKIPERNLETVLSQSVQSIPLYLMPRPNSVAATSSAHLEDLAYLDEQRHTPLRTSLRMPRQSLSGARTQQDLRVRFAPYRPPDISLKPLLFEVPSITTESVFVGRDWVFHEIDAQLQSSNASVNQGVVIVGNIGFGKTAIISRLVALSCHGTRMRQIASDSPHASPKHVDANRELPLTQAPSAHSSITSGSCPGTPEMRRRQEEAMRRLASQVVAYHYCQADNAYTCLVPEFVHNVAALLCRSPQLTAYREQLLREPHLQSMLSLRSCVQDPMASFRRGVLEPLENLHKERKIPDEDFIILIDGLNEAEFHKPDYGDTIVSFLSKMIGNFPSWLKLIVTVRTSLQQH
IRESfinder result
IRESfinder score
0.558021674
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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