top of page
mmu_circTanc1_502
Basic information of circular RNA
PanCircBase ID:
mmu_circTanc1_502
mm39_Chr. Position ID:
chr2|59645661|59650629|+
Gene name:
Tanc1
Transcript:
ENSMUST00000112568.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
17,18,19
Exon/intron offsets:
0,2167,4889
Genomic length:
4968
Exon/intron sizes in nt:
237,186,79
Flanking exon/introns:
chr2:59638033-59645661|chr2:59650629-59663479
Splice length:
502
Other database IDs:
CIRCpedia: HSA_CIRCpedia_38324
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCCGGCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAATGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAAGAAGTTGTCACTCTCCTTCTGGAATTTGGCGCCTGCCTGGATGGGATGTCGGAGAACGGTATGAACGCACTGTGCTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTCATCAAGAAGGGGGCAAGGGTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAACTGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCGGTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGAATGGCAGAGGAACA
59.67
ACAGGATGGGGGCATTGTTT
59.88
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGAATGGCAGAGGAACA
59.67
GAGACTGGACGCACAGGATG
60.46
152
PCR template sequence:
GCCAGCATGGGCCACAGCTCGGTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACAGGTGAGCCGGCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAATGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-214-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGGGAGAAACAGGTGAGCCGGCTCC
siRNA sets
CGGCTCACCTGTTTCTCCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTANC1_502_ORF_1
1.1119
0.363262027
0.902603187
546
ORF sequence:
ATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACAGGTGAGCCGGCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAATGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAAGAAGTTGTCACTCTCCTTCTGGAATTTGGCGCCTGCCTGGATGGGATGTCGGAGAACGGTATGAACGCACTGTGCTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTCATCAAGAAGGGGGCAAGGGTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAACTGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCGGTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACA
Peptide sequence:
MKSKSTAPTRCGEKQVSRLLILGGANVNYRTEVLNNAPILCVQSHLGHEEVVTLLLEFGACLDGMSENGMNALCYAAAAGHMKLVCLLIKKGARVDHLDKKGQCALVHSALRGHSDILQYLLNCEWSAGPPQPGTLRKSQALQQALTAAASMGHSSVVQSLLGMAEEHEIEVNGTDTLWGET
IRESfinder result
IRESfinder score
0.204458895
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page