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mmu_circTanc1_189
Basic information of circular RNA
PanCircBase ID:
mmu_circTanc1_189
mm39_Chr. Position ID:
chr2|59555004|59555193|+
Gene name:
Tanc1
Transcript:
ENSMUST00000112568.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
189
Exon/intron sizes in nt:
189
Flanking exon/introns:
chr2:59529771-59555004|chr2:59555193-59588808
Splice length:
189
Other database IDs:
CIRCpedia: MMU_CIRCpedia_226145, circAtlas: mmu-Tanc1_0037
circBase: hsa_circ_0056798, CIRCpedia: HSA_CIRCpedia_38303
Human Ortholog IDs:
Mature spliced Sequence:
GAGGTGACTTTGGCTCAGAGACGCCTGCCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACTTATCGTGTGAGCTTGGCCAAAGGGGTCTCTATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTTCATCACCTTTGCTGCC
59.47
ACAGGAGAGTCACCACTGGA
59.81
122
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTTCATCACCTTTGCTGCC
59.47
AGGAGAGTCACCACTGGAGG
60.25
120
PCR template sequence:
TTGGCCAAAGGGGTCTCTATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCAGGAGGTGACTTTGGCTCAGAGACGCCTGCCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACTTATCGTGTGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-375-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAAAATCTCCAGGAGGTGACTTTGG
siRNA sets
CAAAGTCACCTCCTGGAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTANC1_189_ORF_1
0.8361
-0.015942413
0.135031509
264
ORF sequence:
ATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCAGGAGGTGACTTTGGCTCAGAGACGCCTGCCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACTTATCGTGTGAGCTTGGCCAAAGGGGTCTCTATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCA
Peptide sequence:
MSLPSSPLLPRQSLLTQSRSNKKSPGGDFGSETPALSSSGDSPVNSLSTTEDTYRVSLAKGVSMSLPSSPLLPRQSLLTQSRSNKKSP
IRESfinder result
IRESfinder score
0.810618578
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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