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mmu_circSyne1_6146
Basic information of circular RNA
PanCircBase ID:
mmu_circSyne1_6146
mm39_Chr. Position ID:
chr10|4980375|5080141|-
Gene name:
Syne1
Transcript:
ENSMUST00000215295.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
38
Exon/intron indexes:
1,45,14,41,43,14,21,41,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Exon/intron offsets:
0,1390,2541,4557,6840,10388,11085,13235,14890,17155,18348,21899,22280,26001,27404,31013,41661,45413,53448,56292,67109,68984,71954,73260,74438,77437,78146,80455,80999,83574,86591,92605,93279,94438,96284,96818,98004,99634
Genomic length:
99766
Exon/intron sizes in nt:
5,99,32,13,12,92,01,21,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr10:4972247-4980375|chr10:5080141-5081907
Splice length:
6146
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATGTGGTCCCATCTGGATGAGAATCGCCAGGAGCTCAGCAGACAGCTGGAGGTGATAGAAAACAGCATCCCAAGTGTGGGCCTGGTAGAAGAGAGTGAGGACAGACTTGTGGAAAGGACAAATCTCTACCAGCATTTAAAATCCAGCCTCAATGAATACCAGCCCAAACTGTACCAAGCACTGGATGATGGGAAGCGACTTCTGATGTCTGTCAGCTGTTCAGAGCTTGAAAGTCAGCTAAATCAGCTGGGAGAGCACTGGCTCAGTAATACGAACAAAGTATCCAAGGAGCTGCACAGACTGGAGACCATACTGAAACACTGGACCAGATATCAAAGTGAAGCTGCAGCTCTCAACCACTGGCTACAGTGCGCTAAGGACAGGCTGGCATTTTGGACTCAGCAGTCTGTGACGGTTCCACAAGAACTGGAAATGGTCCGGGATCATCTCAGTGCTTTCCTGGAGTTCTCTAAAGAAGTAGATGCCAAGTCTGCCCTCAAGTCGTCAGTCACAAGCACAGGAAATCAGCTGCTTCGGTTAAAAAAAGTGGACACAGCGGCCCTGCGTGCTGAGCTGTCCCGCATGGACAGCCAGTGGACTGACCTACTGACCGGCATCCCTGTTGTACAGGAGAAGCTCCATCAGCTCCAGATGGACAAGCTGCCTTCCCGCCATGCCATTTCTGAGGTAATGAGTTGGATCTCACTCATGGAAAGTGTTATCCTGAAGGATGAAGAGGACATTAGAAATGCCATCGGTTACAAGGCGATCCACGAATACCTTCAGAAATACAAGGGTTTCAAGATAGACCTTAACTGCAAGCAGCTAACGGCGGACTTTGTGAACCAGTCAGTGCTCCAAATCAGCAGTCAGGACGTGGAGAGCAAGCGCAGTGACAAGACGGATTTTGCTGAGCAGCTTGGGGCAATGAATAAAAGTTGGCAGCTCTTGCAAGGTCGAGTTGGAGAGAAGATCCAGATGTTGGAAGGCTTGTTGGAGTCATGGTCAGAGTATGAAAACAGTGTCCAGTCTCTGAAAGCCTGGTTTGCAAACCAGGAGAGGAAGCTGAAAGAGCAGCATCTACTTGGCGATCGGAATTCTGTTGAGAATGCTCTGAAGGACTGTCAGGAACTGGAAGATTTGATTAAAGCAAAAGAAAAGGAGGTAGAGAAAATTGAGCAGAATGGCCTCGCATTGATTCAGAACAAGAGGGAGGAGGTCTCTGGCAGTGTCATGAGCACACTGCAAGAACTCAGGCAGACCTGGATCAGTTTAGACCGCACGGTTGAACAATTAAAGATCCAGCTGACCTCAGCCCTTGGCCAGTGGAGCAATCACAAAGCAGCCTGTGACGAGATCAACGGTCACCTCATGGAGGCCAGATACTCCCTGTCCCGATTCCGTCTGTTGACAGGTTCCTCCGAAGCTGTACAAGTTCAGGTCGACAATCTTCAGAATCTTCATGATGAACTAGAAAAACAGGAAGGAGGCTTACAGAAATTTGGCTCTATCACCAACCAACTATTGAAGGAGTGTCACCCACCTGTGGCAGAAACCCTCTCCAGTACTCTGCAAGAAGTCAATATGAGATGGAATAACTTACTGGAAGAGATCGCTGAACAGCTGCACTCCAGCAAGGCCCTCCTTCAGCTCTGGCAGAGATACAAGGACTACTCAAAGCAGTGTGCCTCTGCCATCCAGAGACAAGAGGAACAGACCAGTGTACTGTTGAAGGCAGCCACTAACAAGGATATCGCTGATGATGAAGTCACCAAGTGGATTCAGGATTGCAACGACCTTCTCAAGGGACTGGAGACAGTCAAGGACTCGCTTTTCATCCTCCGTGAACTAGGAGAGCAGCTTGGACAGCAGGTGGATGTTTCCGCAGCAGCAGCCATTCAGTGTGAGCAGCTCTGTTTCAGCCAGCGCCTGGGGGCCCTGGAGCAGGCTCTTTGCAAGCAGCAAGCAGTATTGCAGGCTGGAGTTGTTGACTATGAAACATTTGCCAAGAGCTTAGAAGCCTTAGAGGTCTGGATGGTGGAAGCCGAGGGCATCCTCCAAGGACAGGATCCCACCCATTCCTCTGACCTCTCTACTATCCAGGAAAGGATGGAGGAACTGAAGGGACAGATGCTAAAGTTCAGCAGCTTGGCTCCTGATTTAGACCGTCTCAATGAGTTGGGGTACCGGTTACCCTTAAATGACAAGGAGATCAAGAGGATGCAGAACCTGAACCGCCATTGGTCTCTGACCTCTTCTCAGACCACAGAAAGATTCAGCAAGTTGCAGTCATTCTTGCTTCAGCACCAGACTTTCTTGGAAAAGTGTGAGACATGGATGGAATTTCTGGTTCAGACAGAGCACAAGTTGGCAGTGGAGATCTCAGGCAATTACCAGCATCTTTTGGAGCAGCAAAGAGCACATGAGCTTTTTCAAGCCGAGATGTTCAGCCGCCAGCAGATCCTCCACTCCATCATTGTTGATGGGCAGAATCTTCTAGAACAAGGTCAAGTTGATGATAGGGAAGAGTTCAGCCTGAAGTTGACGCTCCTCAGTAACCAGTGGCAGGGAGTGATTCGAAGGGCCCAACAGAGAAGGGGGATCATTGACAGCCAGATTCGCCAGTGGCAACGCTATAGGGAAATGGCAGAGAAGCTCCGTAAATGGTTGGCTGAGGTGTCTCATCTGCCCCTGAGTGGTCTCGGGAACATCCCAGTACCACTGCAACAAGTGAGGATGCTCTTTGATGAAGTTCAGTTCAAAGAGAAGGTGTTCCTGCGCCAGCAAGGGAGCTACATCCTGACAGTGGAGGCTGGCAAGCAGCTCCTGCTCTCTGCCGACAGTGGCGCCGAGGCCGCCCTGCAGGCTGAGCTCACAGACATCCAAGAGAAGTGGAAGGCAGCCAGCATGCATCTGGAGGAGCAGAAGAAAAAGCTGGCTTTTCTGTTGAAAGACTGGGAAAAATGTGAGAGAGGGATAGCCAATTCTCTGGAGAAGCTCCGAATGTTCAAAAAGAGGTTATCTCAGCCTCTACCTGACCACCATGAGGAACTTCATGCAGAGCAGATGCGGTGTAAGGAACTGGAAAACGCAGTTGGGAGGTGGACAGATGACCTGACAGAGTTGATGCTGGTGAGGGATGCCCTGGCTGTCTACCTCAGTGCTGAGGACATCTCCATGCTGAAGGAACGCGTGGAGCTTCTGCAAAGACAATGGGAAGAGCTTTGTCACCAGGTCTCCCTACGACGACAGCAAGTAAGCGAGCGCCTGAATGAGTGGGCTGTCTTCAGTGAAAAGAACAAGGAGCTGTGTGAGTGGCTGACCCAGATGGAGAGCAAAGTCTCTCAGAACGGAGACATTCTCATCGAAGAGATGATAGAAAAACTCAAGAAGGATTATCAAGAGGAAATTGCTGTTGCCCAAGAGAACAAAATCCAGCTTCAGGAAATGGGAGAACGGCTTGCTAAAGCCAGCCACGAGAGCAAAGCCTCTGAGATTCAGTACAAGCTCAGCAGAGTGAAGGACAGGTGGCAGCATCTCCTGGACCTCATGGCAGCTAGGGTGAAGAAGCTAAAGGAGACGCTGGTTGCTGTGCAGCAGCTGGACAAGAACATGGGCAGCCTGAGGACTTGGCTGGCCCACATGGAGTCAGAGTTGGCCAAGCCCATAGTCTATGATTCTTGTAACTCTGAAGAAATACAGAGGAAACTGAATGAGCAGCAGGAGCTCCAGAGAGACATCGAGAAACACAGCACAGGTGTCGCCTCCGTCCTCAACCTGTGTGAGGTTCTGCTGCATGACTGCGACGCCTGTGCCACCGACGCAGAGTGTGACTCCATCCAGCAGGCCACTCGCAACCTGGACCGGCGGTGGAGGAACATCTGCGCCATGTCCATGGAGAGGAGACTCAAAATTGAAGAGACGTGGCGACTGTGGCAGAAGTTTCTGGATGACTATTCTCGCTTTGAAGACTGGCTGGAGGTTTCAGAAAGGACGGCTGCTTTCCCCAGTTCTTCCGGGGTGCTCTATACAGTTGCCAAGGAGGAGCTGAAGAAGTTTGAGGCTTTCCAGCGGCAGGTCCATGAGAGCCTGACCCAACTAGAGCTTATCAACAAACAGTACCGGCGCCTGGCCAGAGAGAATCGCACAGACTCCGCCTGCAGCCTCAGGCAGATGGTCCATGGGGGCAACCAGAGATGGGACGACCTACAGAAGCGGGTCACCTCCATCTTGCGCAGGCTCAAGCACTTCATTAGCCAGCGTGAGGAGTTCGAGACTGCCCGGGACAGCATTCTTGTCTGGCTCACAGAGATGGATCTGCAGCTCACCAATATTGAACACTTTTCGGAATGTGACGTTCAAGCTAAAATAAAGCAACTCAAGGCTTTCCAACAGGAGATCTCACTGAACCACAATAAAATCGAGCAGATCATTGCCCAGGGGGAGCAGCTGATAGAGAAGAGCGAGCCACTGGATGCCGCTGTCATCGAGGAGGAACTGGACGAGCTCAGACGCTACTGCCAGGAGGTCTTTGGACGTGTGGAAAGATATCACAAGAAACTGATCCGCCTGCCTCTGCCAGATGACCATGACCTCTCAGACCGAGAACTAGATCTCGAAGACTCCACGGCTCTTTCAGACCTCCGCTGGCAGGACCCGTCTGCAGATGGCATGCCCTCCCCACAGCCTTCTTCCAACCCCTCCCTCTCCCTTCCTCAGCCCCTCCGGAGTGAGCGGTCAGGGCGAGATACGCCGGCCAGCGTGGACTCCATCCCCCTGGAATGGGACCACGATTACGACCTCAGTCGAGACCTAGAGTCAGCATCCCGAACTCTGCCCTCAGAAGATGAAGAAGGCGAGGAAGACAAGGAGTTCTACCTCAGGGGAGCTGTTGGCTTGTCAGATGTAGTCATCCCCGAGAACCCTGAGGCCTATGTAAAACTCACAGAAAATGCAATCAGAAATACGTCTGGGGATCCCAGCTCACTGGAGTCACAGATGAGGCAACTGGACAAAGCCCTGGATGACAGCCGCTTCCAGATACAGCAAACCGCAAATATCCTCAGAAGCAAAACCCCCACAGGGCCAGACCTGGACACCAGCTACAAGGGCTACATGAAGCTGCTGGGCGAGTGCAGTGGCAGCATAGATTCCGTGAGGAGACTGGAGCACAAGCTGGCGGAGGAAGAGAGCTTTCCTGGCTTCGTTAACCTCAACAGCACAGAGACTCAGACAGCTGGTGTAATTGACCGCTGGGAGCTCCTGCAGGCCCAGGCAATGAGCAAGGAGTTGAGGATGAAGCAGAACCTTCAGAAGTGGCAGCAGTTTAATTCTGACCTCAACAACATCTGGGCCTGGCTAGGAGAGACAGAGGAGGAGCTGGACAGGCTCCAGCACCTGGCGCTCAGCACTGACATCCACACCATCGAGTCTCACATCAAAAAGCTCAAGGAGCTCCAGAAAGCCGTGGACCACCGCAAAGCCATCATCCTCTCCATCAACCTCTGCAGCTCTGAGTTCACCCAGGCTGACAGCAAAGAGAGTCATGACCTGCAGGATCGCTTATCCCAGATGAATGGGAGATGGGATCGAGTGTGCTCTCTGCTGGAGGACTGGAGAGGCTTGCTGCAGGATGCACTGATGCAGTGCCAGGAGTTCCATGAAATGAGCCATGCCTTGCTTCTCATGCTAGAAAACATTGACAGAAGGAAAAATGAAATTGTCCCAATTGATTCAACCCTTGACCCAGAGACACTTCAGGACCATCACAAGCAACTCATGCAAATAAAGCAGGAGTTGCTGAAGTCCCAACTCAGAGTGGCCTCACTACAAGACATGTCTCGCCAACTCTTGGTGAATGCTGAAGGTTCAGATTGTCTAGAAGCCAAAGAAAAGGTCCATGTGATTGGAAACCGGCTCAAACTTCTCCTGAAGGAGGTCAGCCATCATATCAAGGATCTTGAGAAGTTACTAGACATGTCAAGCAGTCAGCAGGATTTGTCATCATGGTCTTCTGCAGATGAGCTGGACACCTCAGGATCTGTGAGTCCCACATCCGGAAGAAGTACCCCAAACAGACAGAAATCGCCACGAGGCAAATGTAGTCTCTCACAGCCTGGACCCTCTGTCAGCAGCCCAAAGAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGACAGAAATCGCCACGAGG
60.11
TCTCTTCTACCAGGCCCACA
59.88
165
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGACAGAAATCGCCACGAGG
60.11
TCTTCTACCAGGCCCACACT
60.18
163
PCR template sequence:
GTCCCACATCCGGAAGAAGTACCCCAAACAGACAGAAATCGCCACGAGGCAAATGTAGTCTCTCACAGCCTGGACCCTCTGTCAGCAGCCCAAAGAGCAGATGTGGTCCCATCTGGATGAGAATCGCCAGGAGCTCAGCAGACAGCTGGAGGTGATAGAAAACAGCATCCCAAGTGTGGGCCTGGTAGAAGAGAGTGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
46
Interacting miRNAs (#binding sites)
mmu-miR-342-3p(3), mmu-miR-298-5p(2), mmu-miR-182-5p(2), mmu-miR-207(2), mmu-miR-335-3p(2), mmu-miR-540-3p(2), mmu-miR-296-3p(2), mmu-miR-338-3p(2), mmu-miR-134-5p(1), mmu-miR-27b-3p(1), mmu-miR-199a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-let-7b-5p(1), mmu-miR-150-5p(1), mmu-miR-92a-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-217-5p(1), mmu-miR-324-5p(1), mmu-miR-23a-3p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-181b-5p(1), mmu-miR-149-5p(1), mmu-miR-434-5p(1), mmu-miR-351-5p(1), mmu-miR-494-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-676-3p(1), mmu-miR-22-3p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-98-5p(1), mmu-miR-680(1), mmu-miR-1198-5p(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-3470b(1), mmu-miR-1199-5p(1), mmu-miR-350-3p(1), mmu-miR-1904(1), mmu-miR-339-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCCCAAAGAGCAGATGTGGTCCCATC
siRNA sets
ATGGGACCACATCTGCTCT, GACCACATCTGCTCTTTGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSYNE1_6146_ORF_1
1.3132
0.362015353
1
6201
ORF sequence:
ATGTGGTCCCATCTGGATGAGAATCGCCAGGAGCTCAGCAGACAGCTGGAGGTGATAGAAAACAGCATCCCAAGTGTGGGCCTGGTAGAAGAGAGTGAGGACAGACTTGTGGAAAGGACAAATCTCTACCAGCATTTAAAATCCAGCCTCAATGAATACCAGCCCAAACTGTACCAAGCACTGGATGATGGGAAGCGACTTCTGATGTCTGTCAGCTGTTCAGAGCTTGAAAGTCAGCTAAATCAGCTGGGAGAGCACTGGCTCAGTAATACGAACAAAGTATCCAAGGAGCTGCACAGACTGGAGACCATACTGAAACACTGGACCAGATATCAAAGTGAAGCTGCAGCTCTCAACCACTGGCTACAGTGCGCTAAGGACAGGCTGGCATTTTGGACTCAGCAGTCTGTGACGGTTCCACAAGAACTGGAAATGGTCCGGGATCATCTCAGTGCTTTCCTGGAGTTCTCTAAAGAAGTAGATGCCAAGTCTGCCCTCAAGTCGTCAGTCACAAGCACAGGAAATCAGCTGCTTCGGTTAAAAAAAGTGGACACAGCGGCCCTGCGTGCTGAGCTGTCCCGCATGGACAGCCAGTGGACTGACCTACTGACCGGCATCCCTGTTGTACAGGAGAAGCTCCATCAGCTCCAGATGGACAAGCTGCCTTCCCGCCATGCCATTTCTGAGGTAATGAGTTGGATCTCACTCATGGAAAGTGTTATCCTGAAGGATGAAGAGGACATTAGAAATGCCATCGGTTACAAGGCGATCCACGAATACCTTCAGAAATACAAGGGTTTCAAGATAGACCTTAACTGCAAGCAGCTAACGGCGGACTTTGTGAACCAGTCAGTGCTCCAAATCAGCAGTCAGGACGTGGAGAGCAAGCGCAGTGACAAGACGGATTTTGCTGAGCAGCTTGGGGCAATGAATAAAAGTTGGCAGCTCTTGCAAGGTCGAGTTGGAGAGAAGATCCAGATGTTGGAAGGCTTGTTGGAGTCATGGTCAGAGTATGAAAACAGTGTCCAGTCTCTGAAAGCCTGGTTTGCAAACCAGGAGAGGAAGCTGAAAGAGCAGCATCTACTTGGCGATCGGAATTCTGTTGAGAATGCTCTGAAGGACTGTCAGGAACTGGAAGATTTGATTAAAGCAAAAGAAAAGGAGGTAGAGAAAATTGAGCAGAATGGCCTCGCATTGATTCAGAACAAGAGGGAGGAGGTCTCTGGCAGTGTCATGAGCACACTGCAAGAACTCAGGCAGACCTGGATCAGTTTAGACCGCACGGTTGAACAATTAAAGATCCAGCTGACCTCAGCCCTTGGCCAGTGGAGCAATCACAAAGCAGCCTGTGACGAGATCAACGGTCACCTCATGGAGGCCAGATACTCCCTGTCCCGATTCCGTCTGTTGACAGGTTCCTCCGAAGCTGTACAAGTTCAGGTCGACAATCTTCAGAATCTTCATGATGAACTAGAAAAACAGGAAGGAGGCTTACAGAAATTTGGCTCTATCACCAACCAACTATTGAAGGAGTGTCACCCACCTGTGGCAGAAACCCTCTCCAGTACTCTGCAAGAAGTCAATATGAGATGGAATAACTTACTGGAAGAGATCGCTGAACAGCTGCACTCCAGCAAGGCCCTCCTTCAGCTCTGGCAGAGATACAAGGACTACTCAAAGCAGTGTGCCTCTGCCATCCAGAGACAAGAGGAACAGACCAGTGTACTGTTGAAGGCAGCCACTAACAAGGATATCGCTGATGATGAAGTCACCAAGTGGATTCAGGATTGCAACGACCTTCTCAAGGGACTGGAGACAGTCAAGGACTCGCTTTTCATCCTCCGTGAACTAGGAGAGCAGCTTGGACAGCAGGTGGATGTTTCCGCAGCAGCAGCCATTCAGTGTGAGCAGCTCTGTTTCAGCCAGCGCCTGGGGGCCCTGGAGCAGGCTCTTTGCAAGCAGCAAGCAGTATTGCAGGCTGGAGTTGTTGACTATGAAACATTTGCCAAGAGCTTAGAAGCCTTAGAGGTCTGGATGGTGGAAGCCGAGGGCATCCTCCAAGGACAGGATCCCACCCATTCCTCTGACCTCTCTACTATCCAGGAAAGGATGGAGGAACTGAAGGGACAGATGCTAAAGTTCAGCAGCTTGGCTCCTGATTTAGACCGTCTCAATGAGTTGGGGTACCGGTTACCCTTAAATGACAAGGAGATCAAGAGGATGCAGAACCTGAACCGCCATTGGTCTCTGACCTCTTCTCAGACCACAGAAAGATTCAGCAAGTTGCAGTCATTCTTGCTTCAGCACCAGACTTTCTTGGAAAAGTGTGAGACATGGATGGAATTTCTGGTTCAGACAGAGCACAAGTTGGCAGTGGAGATCTCAGGCAATTACCAGCATCTTTTGGAGCAGCAAAGAGCACATGAGCTTTTTCAAGCCGAGATGTTCAGCCGCCAGCAGATCCTCCACTCCATCATTGTTGATGGGCAGAATCTTCTAGAACAAGGTCAAGTTGATGATAGGGAAGAGTTCAGCCTGAAGTTGACGCTCCTCAGTAACCAGTGGCAGGGAGTGATTCGAAGGGCCCAACAGAGAAGGGGGATCATTGACAGCCAGATTCGCCAGTGGCAACGCTATAGGGAAATGGCAGAGAAGCTCCGTAAATGGTTGGCTGAGGTGTCTCATCTGCCCCTGAGTGGTCTCGGGAACATCCCAGTACCACTGCAACAAGTGAGGATGCTCTTTGATGAAGTTCAGTTCAAAGAGAAGGTGTTCCTGCGCCAGCAAGGGAGCTACATCCTGACAGTGGAGGCTGGCAAGCAGCTCCTGCTCTCTGCCGACAGTGGCGCCGAGGCCGCCCTGCAGGCTGAGCTCACAGACATCCAAGAGAAGTGGAAGGCAGCCAGCATGCATCTGGAGGAGCAGAAGAAAAAGCTGGCTTTTCTGTTGAAAGACTGGGAAAAATGTGAGAGAGGGATAGCCAATTCTCTGGAGAAGCTCCGAATGTTCAAAAAGAGGTTATCTCAGCCTCTACCTGACCACCATGAGGAACTTCATGCAGAGCAGATGCGGTGTAAGGAACTGGAAAACGCAGTTGGGAGGTGGACAGATGACCTGACAGAGTTGATGCTGGTGAGGGATGCCCTGGCTGTCTACCTCAGTGCTGAGGACATCTCCATGCTGAAGGAACGCGTGGAGCTTCTGCAAAGACAATGGGAAGAGCTTTGTCACCAGGTCTCCCTACGACGACAGCAAGTAAGCGAGCGCCTGAATGAGTGGGCTGTCTTCAGTGAAAAGAACAAGGAGCTGTGTGAGTGGCTGACCCAGATGGAGAGCAAAGTCTCTCAGAACGGAGACATTCTCATCGAAGAGATGATAGAAAAACTCAAGAAGGATTATCAAGAGGAAATTGCTGTTGCCCAAGAGAACAAAATCCAGCTTCAGGAAATGGGAGAACGGCTTGCTAAAGCCAGCCACGAGAGCAAAGCCTCTGAGATTCAGTACAAGCTCAGCAGAGTGAAGGACAGGTGGCAGCATCTCCTGGACCTCATGGCAGCTAGGGTGAAGAAGCTAAAGGAGACGCTGGTTGCTGTGCAGCAGCTGGACAAGAACATGGGCAGCCTGAGGACTTGGCTGGCCCACATGGAGTCAGAGTTGGCCAAGCCCATAGTCTATGATTCTTGTAACTCTGAAGAAATACAGAGGAAACTGAATGAGCAGCAGGAGCTCCAGAGAGACATCGAGAAACACAGCACAGGTGTCGCCTCCGTCCTCAACCTGTGTGAGGTTCTGCTGCATGACTGCGACGCCTGTGCCACCGACGCAGAGTGTGACTCCATCCAGCAGGCCACTCGCAACCTGGACCGGCGGTGGAGGAACATCTGCGCCATGTCCATGGAGAGGAGACTCAAAATTGAAGAGACGTGGCGACTGTGGCAGAAGTTTCTGGATGACTATTCTCGCTTTGAAGACTGGCTGGAGGTTTCAGAAAGGACGGCTGCTTTCCCCAGTTCTTCCGGGGTGCTCTATACAGTTGCCAAGGAGGAGCTGAAGAAGTTTGAGGCTTTCCAGCGGCAGGTCCATGAGAGCCTGACCCAACTAGAGCTTATCAACAAACAGTACCGGCGCCTGGCCAGAGAGAATCGCACAGACTCCGCCTGCAGCCTCAGGCAGATGGTCCATGGGGGCAACCAGAGATGGGACGACCTACAGAAGCGGGTCACCTCCATCTTGCGCAGGCTCAAGCACTTCATTAGCCAGCGTGAGGAGTTCGAGACTGCCCGGGACAGCATTCTTGTCTGGCTCACAGAGATGGATCTGCAGCTCACCAATATTGAACACTTTTCGGAATGTGACGTTCAAGCTAAAATAAAGCAACTCAAGGCTTTCCAACAGGAGATCTCACTGAACCACAATAAAATCGAGCAGATCATTGCCCAGGGGGAGCAGCTGATAGAGAAGAGCGAGCCACTGGATGCCGCTGTCATCGAGGAGGAACTGGACGAGCTCAGACGCTACTGCCAGGAGGTCTTTGGACGTGTGGAAAGATATCACAAGAAACTGATCCGCCTGCCTCTGCCAGATGACCATGACCTCTCAGACCGAGAACTAGATCTCGAAGACTCCACGGCTCTTTCAGACCTCCGCTGGCAGGACCCGTCTGCAGATGGCATGCCCTCCCCACAGCCTTCTTCCAACCCCTCCCTCTCCCTTCCTCAGCCCCTCCGGAGTGAGCGGTCAGGGCGAGATACGCCGGCCAGCGTGGACTCCATCCCCCTGGAATGGGACCACGATTACGACCTCAGTCGAGACCTAGAGTCAGCATCCCGAACTCTGCCCTCAGAAGATGAAGAAGGCGAGGAAGACAAGGAGTTCTACCTCAGGGGAGCTGTTGGCTTGTCAGATGTAGTCATCCCCGAGAACCCTGAGGCCTATGTAAAACTCACAGAAAATGCAATCAGAAATACGTCTGGGGATCCCAGCTCACTGGAGTCACAGATGAGGCAACTGGACAAAGCCCTGGATGACAGCCGCTTCCAGATACAGCAAACCGCAAATATCCTCAGAAGCAAAACCCCCACAGGGCCAGACCTGGACACCAGCTACAAGGGCTACATGAAGCTGCTGGGCGAGTGCAGTGGCAGCATAGATTCCGTGAGGAGACTGGAGCACAAGCTGGCGGAGGAAGAGAGCTTTCCTGGCTTCGTTAACCTCAACAGCACAGAGACTCAGACAGCTGGTGTAATTGACCGCTGGGAGCTCCTGCAGGCCCAGGCAATGAGCAAGGAGTTGAGGATGAAGCAGAACCTTCAGAAGTGGCAGCAGTTTAATTCTGACCTCAACAACATCTGGGCCTGGCTAGGAGAGACAGAGGAGGAGCTGGACAGGCTCCAGCACCTGGCGCTCAGCACTGACATCCACACCATCGAGTCTCACATCAAAAAGCTCAAGGAGCTCCAGAAAGCCGTGGACCACCGCAAAGCCATCATCCTCTCCATCAACCTCTGCAGCTCTGAGTTCACCCAGGCTGACAGCAAAGAGAGTCATGACCTGCAGGATCGCTTATCCCAGATGAATGGGAGATGGGATCGAGTGTGCTCTCTGCTGGAGGACTGGAGAGGCTTGCTGCAGGATGCACTGATGCAGTGCCAGGAGTTCCATGAAATGAGCCATGCCTTGCTTCTCATGCTAGAAAACATTGACAGAAGGAAAAATGAAATTGTCCCAATTGATTCAACCCTTGACCCAGAGACACTTCAGGACCATCACAAGCAACTCATGCAAATAAAGCAGGAGTTGCTGAAGTCCCAACTCAGAGTGGCCTCACTACAAGACATGTCTCGCCAACTCTTGGTGAATGCTGAAGGTTCAGATTGTCTAGAAGCCAAAGAAAAGGTCCATGTGATTGGAAACCGGCTCAAACTTCTCCTGAAGGAGGTCAGCCATCATATCAAGGATCTTGAGAAGTTACTAGACATGTCAAGCAGTCAGCAGGATTTGTCATCATGGTCTTCTGCAGATGAGCTGGACACCTCAGGATCTGTGAGTCCCACATCCGGAAGAAGTACCCCAAACAGACAGAAATCGCCACGAGGCAAATGTAGTCTCTCACAGCCTGGACCCTCTGTCAGCAGCCCAAAGAGCAGATGTGGTCCCATCTGGATGAGAATCGCCAGGAGCTCAGCAGACAGCTGGAGGTGA
Peptide sequence:
MWSHLDENRQELSRQLEVIENSIPSVGLVEESEDRLVERTNLYQHLKSSLNEYQPKLYQALDDGKRLLMSVSCSELESQLNQLGEHWLSNTNKVSKELHRLETILKHWTRYQSEAAALNHWLQCAKDRLAFWTQQSVTVPQELEMVRDHLSAFLEFSKEVDAKSALKSSVTSTGNQLLRLKKVDTAALRAELSRMDSQWTDLLTGIPVVQEKLHQLQMDKLPSRHAISEVMSWISLMESVILKDEEDIRNAIGYKAIHEYLQKYKGFKIDLNCKQLTADFVNQSVLQISSQDVESKRSDKTDFAEQLGAMNKSWQLLQGRVGEKIQMLEGLLESWSEYENSVQSLKAWFANQERKLKEQHLLGDRNSVENALKDCQELEDLIKAKEKEVEKIEQNGLALIQNKREEVSGSVMSTLQELRQTWISLDRTVEQLKIQLTSALGQWSNHKAACDEINGHLMEARYSLSRFRLLTGSSEAVQVQVDNLQNLHDELEKQEGGLQKFGSITNQLLKECHPPVAETLSSTLQEVNMRWNNLLEEIAEQLHSSKALLQLWQRYKDYSKQCASAIQRQEEQTSVLLKAATNKDIADDEVTKWIQDCNDLLKGLETVKDSLFILRELGEQLGQQVDVSAAAAIQCEQLCFSQRLGALEQALCKQQAVLQAGVVDYETFAKSLEALEVWMVEAEGILQGQDPTHSSDLSTIQERMEELKGQMLKFSSLAPDLDRLNELGYRLPLNDKEIKRMQNLNRHWSLTSSQTTERFSKLQSFLLQHQTFLEKCETWMEFLVQTEHKLAVEISGNYQHLLEQQRAHELFQAEMFSRQQILHSIIVDGQNLLEQGQVDDREEFSLKLTLLSNQWQGVIRRAQQRRGIIDSQIRQWQRYREMAEKLRKWLAEVSHLPLSGLGNIPVPLQQVRMLFDEVQFKEKVFLRQQGSYILTVEAGKQLLLSADSGAEAALQAELTDIQEKWKAASMHLEEQKKKLAFLLKDWEKCERGIANSLEKLRMFKKRLSQPLPDHHEELHAEQMRCKELENAVGRWTDDLTELMLVRDALAVYLSAEDISMLKERVELLQRQWEELCHQVSLRRQQVSERLNEWAVFSEKNKELCEWLTQMESKVSQNGDILIEEMIEKLKKDYQEEIAVAQENKIQLQEMGERLAKASHESKASEIQYKLSRVKDRWQHLLDLMAARVKKLKETLVAVQQLDKNMGSLRTWLAHMESELAKPIVYDSCNSEEIQRKLNEQQELQRDIEKHSTGVASVLNLCEVLLHDCDACATDAECDSIQQATRNLDRRWRNICAMSMERRLKIEETWRLWQKFLDDYSRFEDWLEVSERTAAFPSSSGVLYTVAKEELKKFEAFQRQVHESLTQLELINKQYRRLARENRTDSACSLRQMVHGGNQRWDDLQKRVTSILRRLKHFISQREEFETARDSILVWLTEMDLQLTNIEHFSECDVQAKIKQLKAFQQEISLNHNKIEQIIAQGEQLIEKSEPLDAAVIEEELDELRRYCQEVFGRVERYHKKLIRLPLPDDHDLSDRELDLEDSTALSDLRWQDPSADGMPSPQPSSNPSLSLPQPLRSERSGRDTPASVDSIPLEWDHDYDLSRDLESASRTLPSEDEEGEEDKEFYLRGAVGLSDVVIPENPEAYVKLTENAIRNTSGDPSSLESQMRQLDKALDDSRFQIQQTANILRSKTPTGPDLDTSYKGYMKLLGECSGSIDSVRRLEHKLAEEESFPGFVNLNSTETQTAGVIDRWELLQAQAMSKELRMKQNLQKWQQFNSDLNNIWAWLGETEEELDRLQHLALSTDIHTIESHIKKLKELQKAVDHRKAIILSINLCSSEFTQADSKESHDLQDRLSQMNGRWDRVCSLLEDWRGLLQDALMQCQEFHEMSHALLLMLENIDRRKNEIVPIDSTLDPETLQDHHKQLMQIKQELLKSQLRVASLQDMSRQLLVNAEGSDCLEAKEKVHVIGNRLKLLLKEVSHHIKDLEKLLDMSSSQQDLSSWSSADELDTSGSVSPTSGRSTPNRQKSPRGKCSLSQPGPSVSSPKSRCGPIWMRIARSSADSWR
IRESfinder result
IRESfinder score
0.421411895
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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