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mmu_circSuco_1758
Basic information of circular RNA
PanCircBase ID:
mmu_circSuco_1758
mm39_Chr. Position ID:
chr1|161655225|161666391|-
Gene name:
Suco
Transcript:
ENSMUST00000048377.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
22,21,20,19,18,17,16
Exon/intron offsets:
0,499,1579,5759,6379,10062,11097
Genomic length:
11166
Exon/intron sizes in nt:
92,155,105,88,1158,91,69
Flanking exon/introns:
chr1:161648019-161655225|chr1:161666391-161671570
Splice length:
1758
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATGCCATTCTAAATATGGTGAATATTGCTGCTAATATTCTGGGAGCAAAAACTGAAGACTTGACAGAAGGAAATAAAAGTATATCTGAGAATGCCACTGCCACAACTGAACCTAAAATGACTGAATCAACTCGTGTTTCAACTCCTGTTCCATCACCTGAATATGTAATCAAGGAAGTCCATACACATGATAGAGAACCATCAACCTCAGATCCTCCAAAAGAGAGTCCGATTGTACAACTGGTTCAGGAGGAAGAAGAGGAAGCGAGTCCATCTACAGTGACCCTTTTGGGCAGTGGTGAACAAGAGGATGAGTCGTCATCCTGGTTTGAGTCTGAGACACACATACTTTGTAGTGAGCTGACTTCAATTTGTTGTATTTCTAGTTTTTCGGAGTACATATATAAATGGTGCTCAGTTAGAATTGCTCTTTATCGACAACGCAGCAGGACTGTGAGTAAAGGAAAAGATTTTGTGCCACCTCAGCCATCACTACTACTTCCTGTAGAATCAGTAGAGGTTTCAGTACCGCAGCCTCCCAGTGGCGATGTGGATAGCGAGAACATGGAAAGAGAAGCTGAAACTGTTGATCTGGATGATTTAAGTAGTGTGCACCAGGGGCATTTGATAAATCACACAGTGGACACAATTGAACTTGAACCAAGCTACCCTCAAACTCTTTCTCAGTCTCTTCTCTTAGATGTTACTCCAGAAATGAATTCACTGTCTAAAGTAGAAGGATCTGAGTCTGTTAAATCTGAAGGAGGATATATTCCATCACAATTGATGACCCAAGAGAGTTCTGTTGAGTTTGATGATAAAACAGAAAAAAAGACCGAGAGCTTTAGTTCTGCTGAGAAGCTCTCTGTTATTTATGAAACAAGTAAAGTTAATGAGGTGATGGACAATACTGTGAAAGAAGACATACTCTCCACAGAAGTTGTCACCAAGTTCCCTGAAACAGTAGTACCACCACCTATGAACACAGCCACTGTGCCAGAGGGTGAAAGTGTGGAAACCAAACCTAGTATAGCTGATACACTAAAGCATACAGTGACTCCAGTTATGGATCCTTCATTGCCTGAAGTGAAAGAGGATGAACAGTCTCCAGAGGATGCCCTTTTAAGAGGGTTACAGAGGACAGCTACAGATTTCTATGCTGAATTACAAAATTCTACTGATCTGGGATATGGTAATGGAAATCTTGTGCATGGATCAAATCAGAAGGAGTCAGTATTTATGAGGCTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTCGCTATCTGGAGGAGCTTAGTCAAAGGTACCGCAAACAAATGGAAGAAATGCAGAAGGCTTTCAATAAGACAATAGTTAAGCTTCAGAATACTTCACGGATAGCAGAAGAGCAGGATCAGCGGCAAACTGAAGCCATCCACTTGCTCCAGGCACAACTGACCAACATGACACAGCTTGTTTCAAACCTATCAGCAACTGTAGCAGAATTAAAGCGGGAGGTTTCAGATCGTCAGAGTTACCTTGTCATGTCTTTGGTTTTATGTGTTGTCTTGGGACTGATGCTCTGTATGCAACGCTGTCGAACTACTTCTCAATTTGATGGAGATTACATTTCAAAACTTCCCAAAAGTAATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGACATGAATTTGAAAAGAAGAACATCATTTCCCCTCATCAGATCCAAATCTCTGCAGTTTACTGGCAAAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTGTTTCTCTTCCTATGATGACA
59.51
TGCTCCCAGAATATTAGCAGCA
59.56
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCATTTCCCCTCATCAGATCCA
58.6
GCAGTGGCATTCTCAGATAT
55.29
149
PCR template sequence:
CCTAAAAGGTGTTTCTCTTCCTATGATGACATGAATTTGAAAAGAAGAACATCATTTCCCCTCATCAGATCCAAATCTCTGCAGTTTACTGGCAAAGAAGATGCCATTCTAAATATGGTGAATATTGCTGCTAATATTCTGGGAGCAAAAACTGAAGACTTGACAGAAGGAAATAAAAGTATATCTGAGAATGCCACTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(2), mmu-miR-9-5p(1), mmu-miR-27a-3p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-200c-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-196a-5p(1), mmu-miR-324-3p(1), mmu-miR-34b-5p(1), mmu-miR-325-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-5101(1), mmu-miR-1904(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTGGCAAAGAAGATGCCATTCTAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSUCO_1758_ORF_1
1.0403
0.061305426
1
3501
ORF sequence:
ATGGTGAATATTGCTGCTAATATTCTGGGAGCAAAAACTGAAGACTTGACAGAAGGAAATAAAAGTATATCTGAGAATGCCACTGCCACAACTGAACCTAAAATGACTGAATCAACTCGTGTTTCAACTCCTGTTCCATCACCTGAATATGTAATCAAGGAAGTCCATACACATGATAGAGAACCATCAACCTCAGATCCTCCAAAAGAGAGTCCGATTGTACAACTGGTTCAGGAGGAAGAAGAGGAAGCGAGTCCATCTACAGTGACCCTTTTGGGCAGTGGTGAACAAGAGGATGAGTCGTCATCCTGGTTTGAGTCTGAGACACACATACTTTGTAGTGAGCTGACTTCAATTTGTTGTATTTCTAGTTTTTCGGAGTACATATATAAATGGTGCTCAGTTAGAATTGCTCTTTATCGACAACGCAGCAGGACTGTGAGTAAAGGAAAAGATTTTGTGCCACCTCAGCCATCACTACTACTTCCTGTAGAATCAGTAGAGGTTTCAGTACCGCAGCCTCCCAGTGGCGATGTGGATAGCGAGAACATGGAAAGAGAAGCTGAAACTGTTGATCTGGATGATTTAAGTAGTGTGCACCAGGGGCATTTGATAAATCACACAGTGGACACAATTGAACTTGAACCAAGCTACCCTCAAACTCTTTCTCAGTCTCTTCTCTTAGATGTTACTCCAGAAATGAATTCACTGTCTAAAGTAGAAGGATCTGAGTCTGTTAAATCTGAAGGAGGATATATTCCATCACAATTGATGACCCAAGAGAGTTCTGTTGAGTTTGATGATAAAACAGAAAAAAAGACCGAGAGCTTTAGTTCTGCTGAGAAGCTCTCTGTTATTTATGAAACAAGTAAAGTTAATGAGGTGATGGACAATACTGTGAAAGAAGACATACTCTCCACAGAAGTTGTCACCAAGTTCCCTGAAACAGTAGTACCACCACCTATGAACACAGCCACTGTGCCAGAGGGTGAAAGTGTGGAAACCAAACCTAGTATAGCTGATACACTAAAGCATACAGTGACTCCAGTTATGGATCCTTCATTGCCTGAAGTGAAAGAGGATGAACAGTCTCCAGAGGATGCCCTTTTAAGAGGGTTACAGAGGACAGCTACAGATTTCTATGCTGAATTACAAAATTCTACTGATCTGGGATATGGTAATGGAAATCTTGTGCATGGATCAAATCAGAAGGAGTCAGTATTTATGAGGCTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTCGCTATCTGGAGGAGCTTAGTCAAAGGTACCGCAAACAAATGGAAGAAATGCAGAAGGCTTTCAATAAGACAATAGTTAAGCTTCAGAATACTTCACGGATAGCAGAAGAGCAGGATCAGCGGCAAACTGAAGCCATCCACTTGCTCCAGGCACAACTGACCAACATGACACAGCTTGTTTCAAACCTATCAGCAACTGTAGCAGAATTAAAGCGGGAGGTTTCAGATCGTCAGAGTTACCTTGTCATGTCTTTGGTTTTATGTGTTGTCTTGGGACTGATGCTCTGTATGCAACGCTGTCGAACTACTTCTCAATTTGATGGAGATTACATTTCAAAACTTCCCAAAAGTAATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGACATGAATTTGAAAAGAAGAACATCATTTCCCCTCATCAGATCCAAATCTCTGCAGTTTACTGGCAAAGAAGATGCCATTCTAAATATGGTGAATATTGCTGCTAATATTCTGGGAGCAAAAACTGAAGACTTGACAGAAGGAAATAAAAGTATATCTGAGAATGCCACTGCCACAACTGAACCTAAAATGACTGAATCAACTCGTGTTTCAACTCCTGTTCCATCACCTGAATATGTAATCAAGGAAGTCCATACACATGATAGAGAACCATCAACCTCAGATCCTCCAAAAGAGAGTCCGATTGTACAACTGGTTCAGGAGGAAGAAGAGGAAGCGAGTCCATCTACAGTGACCCTTTTGGGCAGTGGTGAACAAGAGGATGAGTCGTCATCCTGGTTTGAGTCTGAGACACACATACTTTGTAGTGAGCTGACTTCAATTTGTTGTATTTCTAGTTTTTCGGAGTACATATATAAATGGTGCTCAGTTAGAATTGCTCTTTATCGACAACGCAGCAGGACTGTGAGTAAAGGAAAAGATTTTGTGCCACCTCAGCCATCACTACTACTTCCTGTAGAATCAGTAGAGGTTTCAGTACCGCAGCCTCCCAGTGGCGATGTGGATAGCGAGAACATGGAAAGAGAAGCTGAAACTGTTGATCTGGATGATTTAAGTAGTGTGCACCAGGGGCATTTGATAAATCACACAGTGGACACAATTGAACTTGAACCAAGCTACCCTCAAACTCTTTCTCAGTCTCTTCTCTTAGATGTTACTCCAGAAATGAATTCACTGTCTAAAGTAGAAGGATCTGAGTCTGTTAAATCTGAAGGAGGATATATTCCATCACAATTGATGACCCAAGAGAGTTCTGTTGAGTTTGATGATAAAACAGAAAAAAAGACCGAGAGCTTTAGTTCTGCTGAGAAGCTCTCTGTTATTTATGAAACAAGTAAAGTTAATGAGGTGATGGACAATACTGTGAAAGAAGACATACTCTCCACAGAAGTTGTCACCAAGTTCCCTGAAACAGTAGTACCACCACCTATGAACACAGCCACTGTGCCAGAGGGTGAAAGTGTGGAAACCAAACCTAGTATAGCTGATACACTAAAGCATACAGTGACTCCAGTTATGGATCCTTCATTGCCTGAAGTGAAAGAGGATGAACAGTCTCCAGAGGATGCCCTTTTAAGAGGGTTACAGAGGACAGCTACAGATTTCTATGCTGAATTACAAAATTCTACTGATCTGGGATATGGTAATGGAAATCTTGTGCATGGATCAAATCAGAAGGAGTCAGTATTTATGAGGCTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTCGCTATCTGGAGGAGCTTAGTCAAAGGTACCGCAAACAAATGGAAGAAATGCAGAAGGCTTTCAATAAGACAATAGTTAAGCTTCAGAATACTTCACGGATAGCAGAAGAGCAGGATCAGCGGCAAACTGAAGCCATCCACTTGCTCCAGGCACAACTGACCAACATGACACAGCTTGTTTCAAACCTATCAGCAACTGTAGCAGAATTAAAGCGGGAGGTTTCAGATCGTCAGAGTTACCTTGTCATGTCTTTGGTTTTATGTGTTGTCTTGGGACTGATGCTCTGTATGCAACGCTGTCGAACTACTTCTCAATTTGATGGAGATTACATTTCAAAACTTCCCAAAAGTAATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGACATGAATTTGAAAAGAAGAACATCATTTCCCCTCATCAGATCCAAATCTCTGCAGTTTACTGGCAAAGAA
Peptide sequence:
MVNIAANILGAKTEDLTEGNKSISENATATTEPKMTESTRVSTPVPSPEYVIKEVHTHDREPSTSDPPKESPIVQLVQEEEEEASPSTVTLLGSGEQEDESSSWFESETHILCSELTSICCISSFSEYIYKWCSVRIALYRQRSRTVSKGKDFVPPQPSLLLPVESVEVSVPQPPSGDVDSENMEREAETVDLDDLSSVHQGHLINHTVDTIELEPSYPQTLSQSLLLDVTPEMNSLSKVEGSESVKSEGGYIPSQLMTQESSVEFDDKTEKKTESFSSAEKLSVIYETSKVNEVMDNTVKEDILSTEVVTKFPETVVPPPMNTATVPEGESVETKPSIADTLKHTVTPVMDPSLPEVKEDEQSPEDALLRGLQRTATDFYAELQNSTDLGYGNGNLVHGSNQKESVFMRLNNRIKALEVNMSLSGRYLEELSQRYRKQMEEMQKAFNKTIVKLQNTSRIAEEQDQRQTEAIHLLQAQLTNMTQLVSNLSATVAELKREVSDRQSYLVMSLVLCVVLGLMLCMQRCRTTSQFDGDYISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQFTGKEDAILNMVNIAANILGAKTEDLTEGNKSISENATATTEPKMTESTRVSTPVPSPEYVIKEVHTHDREPSTSDPPKESPIVQLVQEEEEEASPSTVTLLGSGEQEDESSSWFESETHILCSELTSICCISSFSEYIYKWCSVRIALYRQRSRTVSKGKDFVPPQPSLLLPVESVEVSVPQPPSGDVDSENMEREAETVDLDDLSSVHQGHLINHTVDTIELEPSYPQTLSQSLLLDVTPEMNSLSKVEGSESVKSEGGYIPSQLMTQESSVEFDDKTEKKTESFSSAEKLSVIYETSKVNEVMDNTVKEDILSTEVVTKFPETVVPPPMNTATVPEGESVETKPSIADTLKHTVTPVMDPSLPEVKEDEQSPEDALLRGLQRTATDFYAELQNSTDLGYGNGNLVHGSNQKESVFMRLNNRIKALEVNMSLSGRYLEELSQRYRKQMEEMQKAFNKTIVKLQNTSRIAEEQDQRQTEAIHLLQAQLTNMTQLVSNLSATVAELKREVSDRQSYLVMSLVLCVVLGLMLCMQRCRTTSQFDGDYISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQFTGKE
IRESfinder result
IRESfinder score
0.658834448
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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