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mmu_circStrbp_624
Basic information of circular RNA
PanCircBase ID:
mmu_circStrbp_624
mm39_Chr. Position ID:
chr2|37517446|37535703|-
Gene name:
Strbp
Transcript:
ENSMUST00000183690.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
5,4,3,2
Exon/intron offsets:
0,7989,13416,18036
Genomic length:
18257
Exon/intron sizes in nt:
92,14,51,66,221
Flanking exon/introns:
chr2:37516589-37517446|chr2:37535703-37537127
Splice length:
624
Other database IDs:
circAtlas: mmu-Strbp_0116
Human Ortholog IDs:
Mature spliced Sequence:
AGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAATGCCTGAATGCCTTGGC
59.75
TGCACAGCTTCAAGTTCCTCT
59.86
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGACTTATTGGACAGGCA
59.75
TGCACAGCTTCAAGTTCCTCT
59.86
161
PCR template sequence:
GGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-181a-5p(1), mmu-miR-362-5p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
CAAATGGTTCCAGAGATCTATTAGAT
siRNA sets
ATCTAATAGATCTCTGGAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSTRBP_624_ORF_1
1.0774
0.141793961
0.997613601
1209
ORF sequence:
ATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAG
Peptide sequence:
MVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEVKKDEAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDRQKCLNALASLRHAKWFQRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEVKKDEAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDRQKCLNALASLRHAKWFQ
IRESfinder result
IRESfinder score
0.427530571
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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