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mmu_circSrp68_222
Basic information of circular RNA
PanCircBase ID:
mmu_circSrp68_222
mm39_Chr. Position ID:
chr11|116141561|116143619|-
Gene name:
Srp68
Transcript:
ENSMUST00000106425.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
10,9
Exon/intron offsets:
0,1993
Genomic length:
2058
Exon/intron sizes in nt:
157,65
Flanking exon/introns:
chr11:116139651-116141561|chr11:116143619-116145127
Splice length:
222
Other database IDs:
CIRCpedia: MMU_CIRCpedia_3989, circAtlas: mmu-Srp68_0018
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_143837
Human Ortholog IDs:
Mature spliced Sequence:
AAGCAGAGAGACTATGCCCTTGATGGAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGCACAGCTACCTGACCTACATCAAGCTGTCAACAGCAATCAGGCGAAACGAGAACATGGCTAAAGGCTTGCACAGGGCTCTGCTGCAGCAGCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACATCATTCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCGGAAGATGACAGCAAG
60.39
GTCAGGTAGCTGTGCAGGTA
59.1
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCGGAAGATGACAGCAAG
60.39
GTAGGTCAGGTAGCTGTGCA
59.1
149
PCR template sequence:
AGGCTTGCACAGGGCTCTGCTGCAGCAGCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACATCATTCTGCAGAAGCAGAGAGACTATGCCCTTGATGGAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGCACAGCTACCTGACCTACATCAAGCTGTCAACAGCAATCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CATCATTCTGCAGAAGCAGAGAGACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSRP68_222_ORF_1
1.3095
0.573070738
0.870584265
330
ORF sequence:
ATGGCTAAAGGCTTGCACAGGGCTCTGCTGCAGCAGCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACATCATTCTGCAGAAGCAGAGAGACTATGCCCTTGATGGAGAGTCTGGGAAGGTGTCAAATCTCCAGTACCTGCACAGCTACCTGACCTACATCAAGCTGTCAACAGCAATCAGGCGAAACGAGAACATGGCTAAAGGCTTGCACAGGGCTCTGCTGCAGCAGCAGCCGGAAGATGACAGCAAGCGCTCTCCCAGGCCTCAGGACCTCATCCGGCTCTATGACATCATTCTGCAG
Peptide sequence:
MAKGLHRALLQQQPEDDSKRSPRPQDLIRLYDIILQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRPQDLIRLYDIILQ
IRESfinder result
IRESfinder score
0.124507791
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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