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mmu_circSorbs2_2990
Basic information of circular RNA
PanCircBase ID:
mmu_circSorbs2_2990
mm39_Chr. Position ID:
chr8|46225570|46258890|+
Gene name:
Sorbs2
Transcript:
ENSMUST00000067065.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20,21,22,23
Exon/intron offsets:
0,3055,10268,11009,12735,17442,20247,22444,27176,28431,31098,31299,33119
Genomic length:
33320
Exon/intron sizes in nt:
17,51,15,15,98,45,75,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr8:46223627-46225570|chr8:46258890-46272755
Splice length:
2990
Other database IDs:
circBase: mmu_circ_0014836, CIRCpedia: MMU_CIRCpedia_20690, circAtlas: mmu-Sorbs2_0076
circAtlas: hsa-SORBS2_0014, CIRCpedia: HSA_CIRCpedia_147799
Human Ortholog IDs:
Mature spliced Sequence:
GTCTGTACAACTCGCCCTACAGTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAATGGCACCGATGCGTTTAAGGAGGTGCCCTCCCCAGTGCCTCCCCCACACGTCCCACCACGACCAAGAGATCAGTCTTCAACACTAAAGCATGACTGGGACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAGCCAAGGAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAAGACCCCCCCCTCTCCCACCAACTCCGACACCTGTTCCCAGGGAACCCAGCCGGAAGCCTCTCTCAGTGTCACCCTCAACAGATGGCCTGCGTAGCCCTTCCCCTCCGCCCAGGAGCTGTGTCCCCGCACCCCGTCCGAGTGCCCCAGATCTCTCTCCCACCCGGACGGGTCGCATAAATCCAGCTGACATAGATTTAGAAAATGAACCCTGGTATAAATTCTTTTCAGAACTGGAGTTTGGACACCCGCCTCCTAAAAAGGCTCTGGATTATGTTCAAGATCATTCTTCCGGTGTGTCCAACGAGGTCTCCATCTATCAGTCCTCCATAGACAGAAGCCTGGAAAGACCCAGCAGCTCTGCAAGCATGGCCGGTGACTTTAGGAAACGGAGGAAGAGCGAACCTGCAGTGGGCCCACTCCGGGGCTTGGGGGATCAGAGTTCAAGCAGGACCAGCCCTGGCCGGGCGGACCTCCCAGGATCAAGTTCCACCTTTACGAAGTCTTTCATTAGCTCTTCTCCTTCCTCTCCCTCGAGAGCACAAGGTGGGGATGATAGCAAAATGTGTCCGCCCCTTTGCAGTTACTCGGGGCTCAATGGCACCCCCTCTGGTGAGTTAGAGTGCTGCAACGCTTACAGACAACATTTGGACGTCCCCGGGGACTCGCAAAGGGCCATCACTTTCAAGAATGGCTGGCAAATGGCCCGGCAAAATGCAGAGATCTGGAGTAGCACTGAAGAGACCGTTTCCCCCAAAATCAAATCACGTAGCTGCGATGATCTCCTGAATGACGACTGCGACAGCTTCCCAGACCCTAAAACCAAGTCAGAGAGTATGGGTTCTCTGTTATGTGAAGAAGACTCCAAAGAGAGCTGCCCCATGACATGGGCGTCCCCCTACATCCAGGAAGTGTGCGGGAACAGCAGATCTAGGCTCAAACACAGGTCAGCCCATAATGCCCCAGGCTTCCTCAAAATGTACAAGAAAATGCATCGCATCAACCGCAAGGACTTGATGAATTCAGAGGTCATTTGCTCGGTGAAATCCAGGATCCTGCAGTACGAGAAGGAGCAACAGCACAGGGGGCTGCTGCACGGATGGAGCCAGTCTTCCACCGAGGAGGTGCCCAGGGACGTGGTGCCCACTCGCATTTCGGAATTTGAAAAGCTGATTCAGAAGTCGAAGTCTATGCCCAATCTAGGAGATGAAATGTTATCTCCTATAACCCTAGAACCCCCACAAAATGGTTTGTGTCCCAAGAGGCGATTTTCTATCGAGTCTCTGCTGGAGGAAGAAACTCAGGTTCGTCACCCTTCTCAGGGTCAGCGAAGCTGCAAGTCTAACACCCTGGTGCCCATCCACATCGAGGTCACCAGCGACGAGCAACCTAGAACACACATGGAGTTTTCCGACAGTGACCAAGATGGGGTTGTGTCCGACCACAGCGACTACGTTCACGTCGAAGGGTCGTCCTTTTGTAGTGAAAGTGACTTTGACCACTTTTCATTCACATCCTCTGAAAGCTTCTACGGATCGAGCCATCACCACCACCATCACCATCACCATCACCGACACCTCATCAGCTCCTGCAAAGGCCGATGCCCGGCTTCTTACACTCGATTTACCACAATGCTAAAACATGAAAGAGCTAAGCATGAAAACATGGACCGACCCAGAAGGCAAGAAATGGATCCTGGCCTGTCTAAGCTTGCATTTCTAGTCAGCCCTGTGCCTTTCCGAAGGAAAAAAATCCTGACTCCCCAAAAACAGACTGAAAAGGCAAAATGCAAAGCCTCAGTAGTTGAAGCTCTGGACTCTGCCCTGAAAGACATTTGCGACCAAATAAAAGCCGAAAAGCGGAGGGGAAGCTTGCCAGACAACAGCATCCTGCACAGGCTTATCAGTGAACTGCTGCCACAGATTCCTGAAAGGAATTCATCTCTTCATGCTCTCAAAAGGAGCCCCATGCACCAGCCTTTCCACCCACTGCCTCCAGATGGTGCTAGTCATTGTCCCCTGTACCAAAATGATTGTGGGAGAATGCCTCACAGTGCCTCTTTCCCTGACGTGGACACAACCAGCAACTACCACGCACAGGACTATGGGAGTGCACTGAGCCTCCAAGATCACGAGTCCCCTAGAAGTTACTCATCTACTCTGACTGACTTGGGCAGAAGTGCATCACGGGAACGAAGGGGAACTCCAGAAAAAGAGAAATTGCCTGCAAAAGCTGTCTATGATTTCAAAGCTCAGACATCTAAGGAGCTGTCATTTAAGAAAGGAGACACTGTCTACATCCTCAGGAAAATTGACCAAAACTGGTATGAGGGGGAACACCACGGCAGAGTGGGCATTTTCCCAATCTCATACGTAGAGAAACTAACACCCCCGGAAAAAGCGCAGCCCGCAAGACCACCACCCCCAGTCCAGCCCGGAGAGATTGGAGAAGCCATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCTCCCTGCGAAAGGGCGACAGGATTATTCTTCTTAAAAGAGTTGACCAAAACTGGTACGAAGGTAAAATCCCAGGAACCAACAGACAAGGCATCTTCCCCGTGTCCTATGTCGAGGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGACTACCCAGACCCTCCTCTGCCCCACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGTGCTGAGGACTACCCA
60.18
TCGGTGCCATTGTCTGAGTG
60.32
177
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACAGCTACTCCAGTGAC
59.75
TCGGTGCCATTGTCTGAGTG
60.32
144
PCR template sequence:
GGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGACTACCCAGACCCTCCTCTGCCCCACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAGGTCTGTACAACTCGCCCTACAGTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAATGGCACCGATGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-705(2), mmu-miR-124-3p(1), mmu-miR-7b-5p(1), mmu-miR-135a-5p(1), mmu-let-7c-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-33-5p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-709(1), mmu-miR-326-3p(1), mmu-miR-24-3p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-351-5p(1), mmu-miR-382-5p(1), mmu-miR-342-5p(1), mmu-miR-1187(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-532-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
AAGCTCCAATAAGGTCTGTACAACTC
siRNA sets
TTGTACAGACCTTATTGGA,GTACAGACCTTATTGGAGC,TGTACAGACCTTATTGGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSORBS2_2990_ORF_1
0.7016
0.2083494
0.999999667
2514
ORF sequence:
ATGGCCGGTGACTTTAGGAAACGGAGGAAGAGCGAACCTGCAGTGGGCCCACTCCGGGGCTTGGGGGATCAGAGTTCAAGCAGGACCAGCCCTGGCCGGGCGGACCTCCCAGGATCAAGTTCCACCTTTACGAAGTCTTTCATTAGCTCTTCTCCTTCCTCTCCCTCGAGAGCACAAGGTGGGGATGATAGCAAAATGTGTCCGCCCCTTTGCAGTTACTCGGGGCTCAATGGCACCCCCTCTGGTGAGTTAGAGTGCTGCAACGCTTACAGACAACATTTGGACGTCCCCGGGGACTCGCAAAGGGCCATCACTTTCAAGAATGGCTGGCAAATGGCCCGGCAAAATGCAGAGATCTGGAGTAGCACTGAAGAGACCGTTTCCCCCAAAATCAAATCACGTAGCTGCGATGATCTCCTGAATGACGACTGCGACAGCTTCCCAGACCCTAAAACCAAGTCAGAGAGTATGGGTTCTCTGTTATGTGAAGAAGACTCCAAAGAGAGCTGCCCCATGACATGGGCGTCCCCCTACATCCAGGAAGTGTGCGGGAACAGCAGATCTAGGCTCAAACACAGGTCAGCCCATAATGCCCCAGGCTTCCTCAAAATGTACAAGAAAATGCATCGCATCAACCGCAAGGACTTGATGAATTCAGAGGTCATTTGCTCGGTGAAATCCAGGATCCTGCAGTACGAGAAGGAGCAACAGCACAGGGGGCTGCTGCACGGATGGAGCCAGTCTTCCACCGAGGAGGTGCCCAGGGACGTGGTGCCCACTCGCATTTCGGAATTTGAAAAGCTGATTCAGAAGTCGAAGTCTATGCCCAATCTAGGAGATGAAATGTTATCTCCTATAACCCTAGAACCCCCACAAAATGGTTTGTGTCCCAAGAGGCGATTTTCTATCGAGTCTCTGCTGGAGGAAGAAACTCAGGTTCGTCACCCTTCTCAGGGTCAGCGAAGCTGCAAGTCTAACACCCTGGTGCCCATCCACATCGAGGTCACCAGCGACGAGCAACCTAGAACACACATGGAGTTTTCCGACAGTGACCAAGATGGGGTTGTGTCCGACCACAGCGACTACGTTCACGTCGAAGGGTCGTCCTTTTGTAGTGAAAGTGACTTTGACCACTTTTCATTCACATCCTCTGAAAGCTTCTACGGATCGAGCCATCACCACCACCATCACCATCACCATCACCGACACCTCATCAGCTCCTGCAAAGGCCGATGCCCGGCTTCTTACACTCGATTTACCACAATGCTAAAACATGAAAGAGCTAAGCATGAAAACATGGACCGACCCAGAAGGCAAGAAATGGATCCTGGCCTGTCTAAGCTTGCATTTCTAGTCAGCCCTGTGCCTTTCCGAAGGAAAAAAATCCTGACTCCCCAAAAACAGACTGAAAAGGCAAAATGCAAAGCCTCAGTAGTTGAAGCTCTGGACTCTGCCCTGAAAGACATTTGCGACCAAATAAAAGCCGAAAAGCGGAGGGGAAGCTTGCCAGACAACAGCATCCTGCACAGGCTTATCAGTGAACTGCTGCCACAGATTCCTGAAAGGAATTCATCTCTTCATGCTCTCAAAAGGAGCCCCATGCACCAGCCTTTCCACCCACTGCCTCCAGATGGTGCTAGTCATTGTCCCCTGTACCAAAATGATTGTGGGAGAATGCCTCACAGTGCCTCTTTCCCTGACGTGGACACAACCAGCAACTACCACGCACAGGACTATGGGAGTGCACTGAGCCTCCAAGATCACGAGTCCCCTAGAAGTTACTCATCTACTCTGACTGACTTGGGCAGAAGTGCATCACGGGAACGAAGGGGAACTCCAGAAAAAGAGAAATTGCCTGCAAAAGCTGTCTATGATTTCAAAGCTCAGACATCTAAGGAGCTGTCATTTAAGAAAGGAGACACTGTCTACATCCTCAGGAAAATTGACCAAAACTGGTATGAGGGGGAACACCACGGCAGAGTGGGCATTTTCCCAATCTCATACGTAGAGAAACTAACACCCCCGGAAAAAGCGCAGCCCGCAAGACCACCACCCCCAGTCCAGCCCGGAGAGATTGGAGAAGCCATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCTCCCTGCGAAAGGGCGACAGGATTATTCTTCTTAAAAGAGTTGACCAAAACTGGTACGAAGGTAAAATCCCAGGAACCAACAGACAAGGCATCTTCCCCGTGTCCTATGTCGAGGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGACTACCCAGACCCTCCTCTGCCCCACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAGGTCTGTACAACTCGCCCTACAGTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAATGGCACCGATGCGTTTAAGGAGGTGCCCTCCCCAGTGCCTCCCCCACACGTCCCACCACGACCAAGAGATCAGTCTTCAACACTAA
Peptide sequence:
MAGDFRKRRKSEPAVGPLRGLGDQSSSRTSPGRADLPGSSSTFTKSFISSSPSSPSRAQGGDDSKMCPPLCSYSGLNGTPSGELECCNAYRQHLDVPGDSQRAITFKNGWQMARQNAEIWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPMTWASPYIQEVCGNSRSRLKHRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRILQYEKEQQHRGLLHGWSQSSTEEVPRDVVPTRISEFEKLIQKSKSMPNLGDEMLSPITLEPPQNGLCPKRRFSIESLLEEETQVRHPSQGQRSCKSNTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYVHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHRHLISSCKGRCPASYTRFTTMLKHERAKHENMDRPRRQEMDPGLSKLAFLVSPVPFRRKKILTPQKQTEKAKCKASVVEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPQIPERNSSLHALKRSPMHQPFHPLPPDGASHCPLYQNDCGRMPHSASFPDVDTTSNYHAQDYGSALSLQDHESPRSYSSTLTDLGRSASRERRGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRNAKGAEDYPDPPLPHSYSSDRIYTLSSNKVCTTRPTVLSPTRLRRLRPTDLFRKATQTMAPMRLRRCPPQCLPHTSHHDQEISLQH
IRESfinder result
IRESfinder score
0.49697298
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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