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mmu_circSnord47_77
Basic information of circular RNA
PanCircBase ID:
mmu_circSnord47_77
mm39_Chr. Position ID:
chr1|160865651|160865728|+
Gene name:
Snord47
Transcript:
ENSMUST00000083034.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
77
Exon/intron sizes in nt:
77
Flanking exon/introns:
None|None
Splice length:
77
Other database IDs:
CIRCpedia: HSA_CIRCpedia_28811
Human Ortholog IDs:
Mature spliced Sequence:
AACCAGTGATGTGATGATTCTGCCAAATGATACAAAGTGATATCACCTTTAAACCGTTCCATTTTATTTCTGAGGTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCACCTTTAAACCGTTCCAT
55.47
GGCAGAATCATCACATCACTGG
59.38
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATCACCTTTAAACCGTTCCATT
56.24
GGCAGAATCATCACATCACTGG
59.38
60
PCR template sequence:
ATATCACCTTTAAACCGTTCCATTTTATTTCTGAGGTTAACCAGTGATGTGATGATTCTGCCAAATGATACAAAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TATTTCTGAGGTTAACCAGTGATGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.856377131
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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