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mmu_circSlc30a7_907
Basic information of circular RNA
PanCircBase ID:
mmu_circSlc30a7_907
mm39_Chr. Position ID:
chr3|115747700|115786688|-
Gene name:
Slc30a7
Transcript:
ENSMUST00000067485.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
10,9,8,7,6,5,4,3
Exon/intron offsets:
0,2819,24592,27710,30773,35960,36675,38874
Genomic length:
38988
Exon/intron sizes in nt:
150,91,136,51,150,127,88,114
Flanking exon/introns:
chr3:115740360-115747700|chr3:115786688-115800482
Splice length:
907
Other database IDs:
circBase: hsa_circ_0013342, circAtlas: hsa-SLC30A7_0035
Human Ortholog IDs:
Mature spliced Sequence:
CCTAGGCTTGATCTCCGACTCCTTCCACATGTTTTTTGATAGTACTGCCATATTGGCCGGATTGGCAGCTTCTGTTATTTCAAAGTGGAGAGATAATGACGCTTTCTCTTATGGGTATGTTAGAGCAGAAGTCCTGGCTGGCTTTGTCAATGGGCTGTTTTTGATCTTCACTGCTTTCTTTATTTTCTCAGAAGGAGTCGAGAGAGCATTGGCTCCTCCAGATGTGCACCACGAGAGACTGCTGCTTGTTTCAATTCTTGGATTTGTGGTAAACCTAGTAGGAATATTTGTTTTCAATCATGGAGGTCACGGACATTCTCATGGCTCTGGCCATGGCCACAGTCATTCCCTCTTTAATGGTGCTCTAGATCACAGCCATGGCCACGAAGATCATTGCCATAGTCACGAAGCCAAGCACGGAGCTGCACACAGCCATGACCATGACCACGCTCATGGCCATGGGCACCTGCATTCCCACGATGGCCCATCCTTCAAAGCAACGGCAGGACCCAGCAGACAGATTTTACAAGGTGTATTTTTACACATTCTAGCCGATACACTGGGAAGTATTGGTGTAATTGCCTCTGCCATCATGATGCAAAATTTTGGGTTGATGATAGCAGATCCTATCTGTTCGATTCTTATAGCCATTCTTATAGTTGTAAGTGTTATTCCACTTTTAAGAGAGTCTGTTGGAATATTAATGCAAAGAACTCCTCCCTCGTTGGAAAATACGCTTCCCCAGTGCTATCAGAGGGTGCAACAGTTACAAGGAGTTTACAACTTGCAAGAACAGCACTTCTGGACACTCTGTTCTGATGTTTACGTGGGAACCTTGAAGCTCGTGGTAGCCCCTGATGCTGACGCCAGGTGGATCTTAAGCCAAACGCATAATATTTTTACTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTTGAAGCTCGTGGTAGC
60.04
AACAGAAGCTGCCAATCCGG
60.96
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAACCTTGAAGCTCGTGGT
60.25
AACAGAAGCTGCCAATCCGG
60.96
154
PCR template sequence:
ACTCTGTTCTGATGTTTACGTGGGAACCTTGAAGCTCGTGGTAGCCCCTGATGCTGACGCCAGGTGGATCTTAAGCCAAACGCATAATATTTTTACTCAGCCTAGGCTTGATCTCCGACTCCTTCCACATGTTTTTTGATAGTACTGCCATATTGGCCGGATTGGCAGCTTCTGTTATTTCAAAGTGGAGAGATAATGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-93-5p(1), mmu-miR-30e-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-434-5p(1), mmu-miR-433-3p(1), mmu-miR-22-3p(1), mmu-miR-511-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATTTTTACTCAGCCTAGGCTTGATC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSLC30A7_907_ORF_1
0.9685
-0.078766347
0.943646969
918
ORF sequence:
ATGTTTTTTGATAGTACTGCCATATTGGCCGGATTGGCAGCTTCTGTTATTTCAAAGTGGAGAGATAATGACGCTTTCTCTTATGGGTATGTTAGAGCAGAAGTCCTGGCTGGCTTTGTCAATGGGCTGTTTTTGATCTTCACTGCTTTCTTTATTTTCTCAGAAGGAGTCGAGAGAGCATTGGCTCCTCCAGATGTGCACCACGAGAGACTGCTGCTTGTTTCAATTCTTGGATTTGTGGTAAACCTAGTAGGAATATTTGTTTTCAATCATGGAGGTCACGGACATTCTCATGGCTCTGGCCATGGCCACAGTCATTCCCTCTTTAATGGTGCTCTAGATCACAGCCATGGCCACGAAGATCATTGCCATAGTCACGAAGCCAAGCACGGAGCTGCACACAGCCATGACCATGACCACGCTCATGGCCATGGGCACCTGCATTCCCACGATGGCCCATCCTTCAAAGCAACGGCAGGACCCAGCAGACAGATTTTACAAGGTGTATTTTTACACATTCTAGCCGATACACTGGGAAGTATTGGTGTAATTGCCTCTGCCATCATGATGCAAAATTTTGGGTTGATGATAGCAGATCCTATCTGTTCGATTCTTATAGCCATTCTTATAGTTGTAAGTGTTATTCCACTTTTAAGAGAGTCTGTTGGAATATTAATGCAAAGAACTCCTCCCTCGTTGGAAAATACGCTTCCCCAGTGCTATCAGAGGGTGCAACAGTTACAAGGAGTTTACAACTTGCAAGAACAGCACTTCTGGACACTCTGTTCTGATGTTTACGTGGGAACCTTGAAGCTCGTGGTAGCCCCTGATGCTGACGCCAGGTGGATCTTAAGCCAAACGCATAATATTTTTACTCAGCCTAGGCTTGATCTCCGACTCCTTCCACATGTTTTTTGA
Peptide sequence:
MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFNHGGHGHSHGSGHGHSHSLFNGALDHSHGHEDHCHSHEAKHGAAHSHDHDHAHGHGHLHSHDGPSFKATAGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPSLENTLPQCYQRVQQLQGVYNLQEQHFWTLCSDVYVGTLKLVVAPDADARWILSQTHNIFTQPRLDLRLLPHVF
IRESfinder result
IRESfinder score
0.643225442
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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