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mmu_circSlc29a1_195
Basic information of circular RNA
PanCircBase ID:
mmu_circSlc29a1_195
mm39_Chr. Position ID:
chr17|45898153|45898596|-
Gene name:
Slc29a1
Transcript:
ENSMUST00000163492.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
10,9
Exon/intron offsets:
0,334
Genomic length:
443
Exon/intron sizes in nt:
86,109
Flanking exon/introns:
chr17:45897231-45898153|chr17:45898596-45899214
Splice length:
195
Other database IDs:
CIRCpedia: MMU_CIRCpedia_212583, circAtlas: mmu-Slc29a1_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCATTGGGTTGTTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCACAAGTCCCTGGAAAAGCTACTTCATTCCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTCTGCATGTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTACTTCATTCCCGTGGC
60.11
CGATGCTGGATTCCACCTCA
59.82
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTACTTCATTCCCGTGGC
60.11
AGTCACAGCAGGGAACAACC
60.18
153
PCR template sequence:
AAGTCCCTGGAAAAGCTACTTCATTCCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTCTGCATGTGGATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCATTGGGTTGTTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TGTCTGCATGTGGATCTGTGTCCCGG
siRNA sets
GACACAGATCCACATGCAG, ACACAGATCCACATGCAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSLC29A1_195_ORF_1
0.9304
0.129449191
0.17620316
201
ORF sequence:
ATGTGGATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCATTGGGTTGTTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCACAAGTCCCTGGAAAAGCTACTTCATTCCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTCTGCATGTGG
Peptide sequence:
MWICVPALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKSYFIPVACFLNFNVFDWLGRSLTAVCMW
IRESfinder result
IRESfinder score
0.809155443
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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