top of page
mmu_circSlc12a7_618
Basic information of circular RNA
PanCircBase ID:
mmu_circSlc12a7_618
mm39_Chr. Position ID:
chr13|73945645|73948608|+
Gene name:
Slc12a7
Transcript:
ENSMUST00000017900.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
12,13,14,15,16
Exon/intron offsets:
0,892,1416,2086,2858
Genomic length:
2963
Exon/intron sizes in nt:
1,75,11,99,91,20,105
Flanking exon/introns:
chr13:73944943-73945645|chr13:73948608-73949046
Splice length:
618
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTTGGGGAGGCCTTGCAAGGGAACCTGGTCATTGGCATGCTGGCCTGGCCATCTCCCTGGGTCATTGTGATTGGCTCCTTCTTCTCCACCTGTGGTGCTGGCCTGCAGAGCCTGACTGGGGCACCCCGCCTACTGCAGGCCATTGCGCGTGACGGAATCATCCCCTTCCTACAGGTGTTTGGTCATGGAAAGGCCAACGGGGAGCCCACATGGGCCCTGCTGCTCACGGCTCTCATCTGTGAGACCGGTATCCTCATCGCCTCCCTGGACAGTGTGGCCCCCATCCTGTCCATGTTCTTCCTCATGTGCTACATGTTCGTCAATCTGGCCTGTGCCGTACAGACCCTGCTACGCACACCCAACTGGCGTCCACGCTTCAAGTTCTACCACTGGACCCTCTCCTTCCTTGGGATGAGTCTCTGCCTCGCGCTGATGTTCATCTGCTCCTGGTACTACGCCCTTTTCGCCATGCTCATTGCCGGCTGCATCTACAAGTACATCGAGTACCGCGGGGCTGAGAAGGAGTGGGGGGATGGCATCAGGGGCCTGTCACTGAATGCTGCCCGCTACGCCCTGCTGCGTGTGGAACATGGGCCCCCACATACCAAGAACTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGGGGCCTGTCACTGAATG
60.68
AGGTGGAGAAGAAGGAGCCA
60.18
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGGGGCCTGTCACTGAATG
60.68
CAGGTGGAGAAGAAGGAGCC
59.75
171
PCR template sequence:
AGAAGGAGTGGGGGGATGGCATCAGGGGCCTGTCACTGAATGCTGCCCGCTACGCCCTGCTGCGTGTGGAACATGGGCCCCCACATACCAAGAACTGGAGGTTTGGGGAGGCCTTGCAAGGGAACCTGGTCATTGGCATGCTGGCCTGGCCATCTCCCTGGGTCATTGTGATTGGCTCCTTCTTCTCCACCTGTGGTGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-103-3p(1), mmu-miR-322-5p(1), mmu-miR-709(1), mmu-miR-214-3p(1), mmu-miR-107-3p(1), mmu-miR-666-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCAAGAACTGGAGGTTTGGGGAGGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSLC12A7_618_ORF_1
1.1591
0.416976385
0.999273316
1197
ORF sequence:
ATGCTGGCCTGGCCATCTCCCTGGGTCATTGTGATTGGCTCCTTCTTCTCCACCTGTGGTGCTGGCCTGCAGAGCCTGACTGGGGCACCCCGCCTACTGCAGGCCATTGCGCGTGACGGAATCATCCCCTTCCTACAGGTGTTTGGTCATGGAAAGGCCAACGGGGAGCCCACATGGGCCCTGCTGCTCACGGCTCTCATCTGTGAGACCGGTATCCTCATCGCCTCCCTGGACAGTGTGGCCCCCATCCTGTCCATGTTCTTCCTCATGTGCTACATGTTCGTCAATCTGGCCTGTGCCGTACAGACCCTGCTACGCACACCCAACTGGCGTCCACGCTTCAAGTTCTACCACTGGACCCTCTCCTTCCTTGGGATGAGTCTCTGCCTCGCGCTGATGTTCATCTGCTCCTGGTACTACGCCCTTTTCGCCATGCTCATTGCCGGCTGCATCTACAAGTACATCGAGTACCGCGGGGCTGAGAAGGAGTGGGGGGATGGCATCAGGGGCCTGTCACTGAATGCTGCCCGCTACGCCCTGCTGCGTGTGGAACATGGGCCCCCACATACCAAGAACTGGAGGTTTGGGGAGGCCTTGCAAGGGAACCTGGTCATTGGCATGCTGGCCTGGCCATCTCCCTGGGTCATTGTGATTGGCTCCTTCTTCTCCACCTGTGGTGCTGGCCTGCAGAGCCTGACTGGGGCACCCCGCCTACTGCAGGCCATTGCGCGTGACGGAATCATCCCCTTCCTACAGGTGTTTGGTCATGGAAAGGCCAACGGGGAGCCCACATGGGCCCTGCTGCTCACGGCTCTCATCTGTGAGACCGGTATCCTCATCGCCTCCCTGGACAGTGTGGCCCCCATCCTGTCCATGTTCTTCCTCATGTGCTACATGTTCGTCAATCTGGCCTGTGCCGTACAGACCCTGCTACGCACACCCAACTGGCGTCCACGCTTCAAGTTCTACCACTGGACCCTCTCCTTCCTTGGGATGAGTCTCTGCCTCGCGCTGATGTTCATCTGCTCCTGGTACTACGCCCTTTTCGCCATGCTCATTGCCGGCTGCATCTACAAGTACATCGAGTACCGCGGGGCTGAGAAGGAGTGGGGGGATGGCATCAGGGGCCTGTCACTGAATGCTGCCCGCTACGCCCTGCTGCGTGTGGAACATGGGCCCCCACATACCAAGAACTGG
Peptide sequence:
MLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIIPFLQVFGHGKANGEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALFAMLIAGCIYKYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNWRFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIIPFLQVFGHGKANGEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALFAMLIAGCIYKYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNW
IRESfinder result
IRESfinder score
0.524533208
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page