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mmu_circSgms1_82
Basic information of circular RNA
PanCircBase ID:
mmu_circSgms1_82
mm39_Chr. Position ID:
chr19|32200908|32200990|-
Gene name:
Sgms1
Transcript:
ENSMUST00000099514.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
82
Exon/intron sizes in nt:
82
Flanking exon/introns:
chr19:32137763-32200908|chr19:32200990-32225393
Splice length:
82
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATGGAGACCTACTGGAACACGCGGAGAAGCTAGTATCTTGCAGGAAGCCAAGATGAGGAGAGTCTTTTTAAAATAATCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGGAAGCCAAGATGAGG
60.03
GCGTGTTCCAGTAGGTCTCC
60.11
66
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGGAAGCCAAGATGAGG
60.03
ACTAGCTTCTCCGCGTGTTC
60.11
78
PCR template sequence:
TGCAGGAAGCCAAGATGAGGAGAGTCTTTTTAAAATAATCCGTAATGGAGACCTACTGGAACACGCGGAGAAGCTAGTATCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TTTAAAATAATCCGTAATGGAGACCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.586483474
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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