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mmu_circSgms1_165
Basic information of circular RNA
PanCircBase ID:
mmu_circSgms1_165
mm39_Chr. Position ID:
chr19|32225393|32237497|-
Gene name:
Sgms1
Transcript:
ENSMUST00000142618.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,11982
Genomic length:
12104
Exon/intron sizes in nt:
43,122
Flanking exon/introns:
chr19:32200990-32225393|chr19:32237497-32266940
Splice length:
165
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGGCAACTGGATATAATGGTTTGAATGAAAATGGCTTCCTAGGAAGTTGCACAATAGGAGGTGTGGCCTTGCTGAAGGAAGTGTTGTCACAAGAGGTGGGCTTTGAGGTTTCCAGTGCTCAGACCGGAAGAAAGACTGATGAAGAAAAGTAACAGCATGATTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGAGGTGGGCTTTGAGGT
59.89
GCCACACCTCCTATTGTGCA
60.32
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAAGAGGTGGGCTTTGAGG
59.89
GCCACACCTCCTATTGTGCA
60.32
144
PCR template sequence:
TTGTCACAAGAGGTGGGCTTTGAGGTTTCCAGTGCTCAGACCGGAAGAAAGACTGATGAAGAAAAGTAACAGCATGATTGAGGGGCAACTGGATATAATGGTTTGAATGAAAATGGCTTCCTAGGAAGTTGCACAATAGGAGGTGTGGCCTTGCTGAAGGAAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-384-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGCATGATTGAGGGGCAACTGGATA
siRNA sets
ATCCAGTTGCCCCTCAATC, TATCCAGTTGCCCCTCAAT, TTGCCCCTCAATCATGCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.417131816
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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