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mmu_circSetx_4978
Basic information of circular RNA
PanCircBase ID:
mmu_circSetx_4978
mm39_Chr. Position ID:
chr2|29029231|29044108|+
Gene name:
Setx
Transcript:
ENSMUST00000061578.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
6,7,8,9,10,11,12
Exon/intron offsets:
0,1049,4670,4958,5383,10788,14718
Genomic length:
14877
Exon/intron sizes in nt:
22,01,20,17,28,84,11,90,00,000
Flanking exon/introns:
chr2:29024043-29029231|chr2:29044108-29046999
Splice length:
4978
Other database IDs:
CIRCpedia: MMU_CIRCpedia_216391, circAtlas: mmu-Setx_0024
Human Ortholog IDs:
Mature spliced Sequence:
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAGCTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAGGTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGCTCAGACAAGCAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATGATGATAGCATGGATCCTTTTTGGCCAGCATTACACTGTTTCATGGTGATTCTTGATCGCCTTGGATCTAAGGTATGGGGTCAACTTATTGACCCTATTGAAGCATTTCAAACCATCATTAACAACGAGAGCTACAACAGAGAGATCCAGAATATACGGAACAGCTCCATAAGGACCAAGTTAGAACCGGAGCCACATTTTGATGATATGGTGACGTGCAGCCAGATTGTTTATAACTTTAATCCTGAAAAGACCAAAAAGGATTCTGGGTGGAGATCAGCCATTTGTCCAGATTATTGTCCAAACATGTATGAAGAAATGGAAACATTAGCCAATGTACTTCAGTCAGATATTGGTCAAGATATGCGTGTTCATAACAGCACCTTTCTGTGGTTCATACCTTTTGTTCAGTCACTCATGGATCTTAAGGATTTGGGTGTGGCTTACATAGTAGAAGTTATTCATCATCTATACTCAGAAGTCAAAGATGTCCTCAACCAGACAGATGCTGTGTGTGACAAAGTCACTGAATTTTTTATTCTGATTTTAATATCAGTGATTGAGCTGCATAGAAATAAAAAATGCTTGCATCTGCTGTGGGTGAGTTCTCAGCAGTGGGTAGAAGCTGTTGTGAAGTGTGCCAAGCTTCCTACTACCGCATTTGTCCGGAGTTGTGAGAAGTCACCTGGAAGTACCTCCAGAGGAGCAGCAATAATGTCGTCCTTGGCGTTGCATTCGGTGCAGTCTAACTCTGTCCAGCTTGCTTGTGTACAGTTGATTAGAGGTCTCCTCAAAGAAGGTTATCAGCTTGGTCAGCAAACACTTTGTAAGCGGTTCTGGGATAAGCTTAACTTATTCCTTCGAGGAAATTTGTCTCTGGGTTGGCAATTGACTGGTCAAGAAACCCATGAGTTACAAATGTGTTTGAAACAAATAATTAGAAACATAAAATTCAAAATGCCCCAATATAGCACTTTTGGGGATTCAACTTCTACATTTAAAACCCCTCCATCTTTTAAAGAAGAAAGTGATAAAATAGACAGGAAGCATAAAAAAAACATTTATTGTTTGGAAAATTGCAGTCCAGTGTCTTCTAAAGAGCCAATGAAAGCTGACACCCATCGAGTATTGATGAAAGTAAATACTACAGAAGAGGAGAACTTCAAGCAGCATTACATTGATTTGAATGAAGAAGAGCAAGAGCCTCTTCCAGCTGAGTTGTGCTTGAAGCAGAAAAGTGAGGCCCTTTTTTCTGAAAGTGCTCAAGAGCAAGTTAAAATTAGCGCAGAGAAGTCTGGGAAAGAAAGCTCTTCATATGCACCATCAAATAGTACTTCAAGAAATGGTCCAGAATGGGGATGTGACAGAGGAGTGATAATGTCAGCACATTCATTGACTGATTCTAGCAGTGATTTTATGGAACAGGTATCTACATCAAATGAAGATGTCTCATTAAAGGATGGCTCTGTTGGTAAAACTTCAAAACCAAGTTTCAAATTACAGAAAGATGAAATTTGTGCAAAGTTATCACATGTCATAAAGAAGCAAATCAGGAAAAGTACTTTGGTAGATAATATTATCGATCTAGAGGAAAATACAGCTATATCTGACCTTGAGAACTGTTCAGGAACAGATGGAGGAGCTCTAAAGGAAGATAGTATTGGACACAATGTCCCTTCAGACCCTGTTCTGGATGACAAGCATGAAGAGCAAAAATCTCAAAACAGTTCATTATTCAAGAAAGAGATAAAGAGTGAGGAGTTGGATAATAGTAGTTCTGATGATGAAGACAAGCTTCAAATCCAGGAAGGCCGTGCTGACGATGATTTGGTATCATTTACAGAAGTTACTGATACACTGGTGAAAGCTCCATGTGAGGGTCATGTAAAGATGGTAGTTGAATCAAGAGATAAGGAAATGAGAGAGAGTACAGCGTTGACTTCTAACTTGGTAGAAGGACAGGTGCCTCATGACAGTAGCAAGCCTTTGGTTGCAGGTCGTCAAATAGACCTCTGTAACATAACTTTAATATCTCAAACCACTGTTATTCAATTTCCATCAGGTTTAAGTAAACAGAATTCATTTCAGCTACAAAAAGGTGATAAAAGATGTTTGACAGCTAACCAAAACAGTGCTGCCACCTGCCGTGGACAAGTTATTGTGATTTCAGATTCTGACGAAGAAGAGGATGAGGATGAAGATGAAAGAAGTAGTAGTGAGGAAAACATCAAACAGAGTAAAGCATGCATAGGGAAAGACTGCTCAGAGCATCGTAGCTTGGCAGTTAATGCCAGTGTGGAGAAGCAGCTTGTAAAAGAGGAAGAAAGGTACCCTGTAGAATTTGAAGACTCTGAATCTCAGGTTTTTGAGTTTGAAAGCTCATCTGAAGTCTTTTCAGTTTGGCAAGATCATAAAATAGACAGCAAAAACTCCCTTCAAGGGGAACAGAAGAGCTATGTAACTCATGTAGCTGATAGTACAAACAATAACTTGGGTTGTGGTGACTCTGTGTCTGAAGAGGTTGTTAGAAACAAAGCAGAGGGAGTTAAAGAGCATGCAGGACCACATAGTAGTGTTTCTGCTGAGGAATTTTGTAAAACTGGAGTAAAAAAACCTAAGAGGAAACGCTATGACAAAGTTACAGCTGAAGATCCTCAGAGGCCTTCCTCTTCTGTTGGAACTGATCAATTGCCTGATCGCAGAGATCTTACTGAAAGTGATTTAAAGAGTGCAGACATGGGGATGGCAACTCCCAGTTCAAGTGTTGAGAGAGATTCTACAATTTTACAGAAGTCTACAAAATCTCGAACTCACTCAAAACCTGTTAGGAAAGTTCCAGCCTCTAAGGCAACTAAGAAAACACATTCAGACACCAGAAGAGGACAGTCTAAGAGTTCATGTTACATAAGTTGTAGAACTTCTCCTGCTATTGTGCCACCAAAGAAGCTTCGTCAGTGTCCAGAGCCAACTTCAACAGTTGAAAAACTTGGTCTGAAAAAAGCCCCTAGGAAGGCATTTGAGTTGTCCCAGAGGTCTCTGGAGTGTATAGTCCAATTACGTGACCACGGGAAGACTGTTGGAGTAGTTGACGCCCCCAAGAAAGCTAAATTAATTTCTCCTCAGACTCTTTCTATCAAAAATAATAAGAAGCTTCTGACAAGCCAGGATCTTCAATTTCAAAGGCTTATGAGATCCAGATCACATAAAAAACGAGACTTTGATTACAAAAATACTGATACTGTAAGAGTGTCACGCATAGTACAGGGATCAGATGTACTTGAAGCAGACTCTGATGAGCCAGATGATCATAGAGTAAGTGAGCCACTTGCCATCAGTAATGAAAAACAGTTAGCAAAATGCATGCTTTCCAAAACAGAAGTGGCAGAAGCCTCTTCTGATCCTTGGGTGACAGGTATAACTTGTCTTGTGAACCAGTGTGAATCTAGAGTGTTAAGTGGAGGAGTGCCAACAGATGTGGTGATGGTCTCTGCTTCAGAGGACCCTGTGGATGGAGGTGCTGTCACAGTTCAAGTTGGGGAGGTGGCATCTGTGAAAGCTGCAGAGCCAGCGTCTAGTAGTGATACAGATGATGATGACAACTTATTCCTAACACAACATGATCCTCAAGATATGGATCTGTGCTCACAGTTGGAAAATAAAACCATTATCGTGGCTCATAAAAAAGATACAGTTCAGAGAGAAGATTCTTTAAGTCGGCCTCAGTTGGAGTCTTTGAGTATCACAAAGTGTAAATACAAAGACTGTGTCGAAACTACAAAAAACCAGGGTGAATACTGCCCAAGACACTCTGAAGCTAAAGCAGCAGATGACGGCCTGTTCCGTAAACCTGGCTTGCCTCTTTCTGTAGCCAGGCCCTTGAGACCTACTACTACCAAGATATTTAGCTCAAGCAGCGCTTCACGAACTGCCAATCTTTCCAAGTCTTTGGAAAGTACTACACTTCAGCAGTCAGCACTAAAAAATAAGTCAAGTGGAGCGCAGCCTAATTTGAAGGTGACACCACCCTCTTCCATGGGTTCTCAGAAGCCAGTGGCTGAGGTGAAAAGTCTATGCAATATTTTTCATTTTCAGACTCCAAGCAGTTCCAGCAAACAGAGTTGCAAGCTTACATTTAGTGAGAACAGGCCTACATCAGCTGCTTCTCCAGTGAATATTCTCTTGCCATCGCAGTCTATCTTTGACACCTTCATTAAAGAGGTCTTAAAATGGAAATACCAAATGTTTTTGAACTTTGATAAGTGTGGTGCTCCAACAAGTCTCTGTCAGTCTATCTCAAGACCTGTGCCTGTCCGATTTCAAGATTGTGCAGAATATTTTAATGTTTTTCTACCTTTGATTATATTGAATGCTTTTGAAACAGTGGCACAGGAATGGCTGAGCTCTCCAAATAAAGAGAATTTCTATCAGTTGCAATTACGAAAATTTCCAGCTGACTATAAAAAATACTGGGAGTTTCTGATTTACTTGAACGAATCTGAACTTGCTAAACAGCTTCACCCAAAGGAAAATGATCTGGTGTTTCTGGCTCCTGAGAAGAGTTATATGGACAGGCATGGCATGCAAGATTGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGTCGCACTTCAGTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGGCTCCTGAGAAGAGTT
57.68
ATCTCTGTCCACCTTCCCCA
59.88
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCTGGCTCCTGAGAAGAGT
57.68
ATCTCTGTCCACCTTCCCCA
59.88
153
PCR template sequence:
TTTCTGGCTCCTGAGAAGAGTTATATGGACAGGCATGGCATGCAAGATTGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGTCGCACTTCAGTTAGTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-362-5p(2), mmu-miR-129-5p(2), mmu-miR-1904(2), mmu-miR-20b-5p(1), mmu-miR-140-5p(1), mmu-miR-134-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-199a-5p(1), mmu-miR-135a-5p(1), mmu-miR-26a-5p(1), mmu-miR-106b-5p(1), mmu-miR-146a-5p(1), mmu-miR-18a-5p(1), mmu-miR-222-3p(1), mmu-miR-132-3p(1), mmu-miR-203-3p(1), mmu-miR-185-5p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-431-5p(1), mmu-miR-26b-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-411-3p(1), mmu-miR-96-5p(1), mmu-miR-212-3p(1), mmu-miR-194-5p(1), mmu-miR-383-5p(1), mmu-miR-377-3p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-5099(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CGCACTTCAGTTAGTTCGGCGATGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSETX_4978_ORF_1
1.0045
0.019949862
1
5088
ORF sequence:
ATGATCTGGTGTTTCTGGCTCCTGAGAAGAGTTATATGGACAGGCATGGCATGCAAGATTGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGTCGCACTTCAGTTAGTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAGCTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAGGTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGCTCAGACAAGCAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATGATGATAGCATGGATCCTTTTTGGCCAGCATTACACTGTTTCATGGTGATTCTTGATCGCCTTGGATCTAAGGTATGGGGTCAACTTATTGACCCTATTGAAGCATTTCAAACCATCATTAACAACGAGAGCTACAACAGAGAGATCCAGAATATACGGAACAGCTCCATAAGGACCAAGTTAGAACCGGAGCCACATTTTGATGATATGGTGACGTGCAGCCAGATTGTTTATAACTTTAATCCTGAAAAGACCAAAAAGGATTCTGGGTGGAGATCAGCCATTTGTCCAGATTATTGTCCAAACATGTATGAAGAAATGGAAACATTAGCCAATGTACTTCAGTCAGATATTGGTCAAGATATGCGTGTTCATAACAGCACCTTTCTGTGGTTCATACCTTTTGTTCAGTCACTCATGGATCTTAAGGATTTGGGTGTGGCTTACATAGTAGAAGTTATTCATCATCTATACTCAGAAGTCAAAGATGTCCTCAACCAGACAGATGCTGTGTGTGACAAAGTCACTGAATTTTTTATTCTGATTTTAATATCAGTGATTGAGCTGCATAGAAATAAAAAATGCTTGCATCTGCTGTGGGTGAGTTCTCAGCAGTGGGTAGAAGCTGTTGTGAAGTGTGCCAAGCTTCCTACTACCGCATTTGTCCGGAGTTGTGAGAAGTCACCTGGAAGTACCTCCAGAGGAGCAGCAATAATGTCGTCCTTGGCGTTGCATTCGGTGCAGTCTAACTCTGTCCAGCTTGCTTGTGTACAGTTGATTAGAGGTCTCCTCAAAGAAGGTTATCAGCTTGGTCAGCAAACACTTTGTAAGCGGTTCTGGGATAAGCTTAACTTATTCCTTCGAGGAAATTTGTCTCTGGGTTGGCAATTGACTGGTCAAGAAACCCATGAGTTACAAATGTGTTTGAAACAAATAATTAGAAACATAAAATTCAAAATGCCCCAATATAGCACTTTTGGGGATTCAACTTCTACATTTAAAACCCCTCCATCTTTTAAAGAAGAAAGTGATAAAATAGACAGGAAGCATAAAAAAAACATTTATTGTTTGGAAAATTGCAGTCCAGTGTCTTCTAAAGAGCCAATGAAAGCTGACACCCATCGAGTATTGATGAAAGTAAATACTACAGAAGAGGAGAACTTCAAGCAGCATTACATTGATTTGAATGAAGAAGAGCAAGAGCCTCTTCCAGCTGAGTTGTGCTTGAAGCAGAAAAGTGAGGCCCTTTTTTCTGAAAGTGCTCAAGAGCAAGTTAAAATTAGCGCAGAGAAGTCTGGGAAAGAAAGCTCTTCATATGCACCATCAAATAGTACTTCAAGAAATGGTCCAGAATGGGGATGTGACAGAGGAGTGATAATGTCAGCACATTCATTGACTGATTCTAGCAGTGATTTTATGGAACAGGTATCTACATCAAATGAAGATGTCTCATTAAAGGATGGCTCTGTTGGTAAAACTTCAAAACCAAGTTTCAAATTACAGAAAGATGAAATTTGTGCAAAGTTATCACATGTCATAAAGAAGCAAATCAGGAAAAGTACTTTGGTAGATAATATTATCGATCTAGAGGAAAATACAGCTATATCTGACCTTGAGAACTGTTCAGGAACAGATGGAGGAGCTCTAAAGGAAGATAGTATTGGACACAATGTCCCTTCAGACCCTGTTCTGGATGACAAGCATGAAGAGCAAAAATCTCAAAACAGTTCATTATTCAAGAAAGAGATAAAGAGTGAGGAGTTGGATAATAGTAGTTCTGATGATGAAGACAAGCTTCAAATCCAGGAAGGCCGTGCTGACGATGATTTGGTATCATTTACAGAAGTTACTGATACACTGGTGAAAGCTCCATGTGAGGGTCATGTAAAGATGGTAGTTGAATCAAGAGATAAGGAAATGAGAGAGAGTACAGCGTTGACTTCTAACTTGGTAGAAGGACAGGTGCCTCATGACAGTAGCAAGCCTTTGGTTGCAGGTCGTCAAATAGACCTCTGTAACATAACTTTAATATCTCAAACCACTGTTATTCAATTTCCATCAGGTTTAAGTAAACAGAATTCATTTCAGCTACAAAAAGGTGATAAAAGATGTTTGACAGCTAACCAAAACAGTGCTGCCACCTGCCGTGGACAAGTTATTGTGATTTCAGATTCTGACGAAGAAGAGGATGAGGATGAAGATGAAAGAAGTAGTAGTGAGGAAAACATCAAACAGAGTAAAGCATGCATAGGGAAAGACTGCTCAGAGCATCGTAGCTTGGCAGTTAATGCCAGTGTGGAGAAGCAGCTTGTAAAAGAGGAAGAAAGGTACCCTGTAGAATTTGAAGACTCTGAATCTCAGGTTTTTGAGTTTGAAAGCTCATCTGAAGTCTTTTCAGTTTGGCAAGATCATAAAATAGACAGCAAAAACTCCCTTCAAGGGGAACAGAAGAGCTATGTAACTCATGTAGCTGATAGTACAAACAATAACTTGGGTTGTGGTGACTCTGTGTCTGAAGAGGTTGTTAGAAACAAAGCAGAGGGAGTTAAAGAGCATGCAGGACCACATAGTAGTGTTTCTGCTGAGGAATTTTGTAAAACTGGAGTAAAAAAACCTAAGAGGAAACGCTATGACAAAGTTACAGCTGAAGATCCTCAGAGGCCTTCCTCTTCTGTTGGAACTGATCAATTGCCTGATCGCAGAGATCTTACTGAAAGTGATTTAAAGAGTGCAGACATGGGGATGGCAACTCCCAGTTCAAGTGTTGAGAGAGATTCTACAATTTTACAGAAGTCTACAAAATCTCGAACTCACTCAAAACCTGTTAGGAAAGTTCCAGCCTCTAAGGCAACTAAGAAAACACATTCAGACACCAGAAGAGGACAGTCTAAGAGTTCATGTTACATAAGTTGTAGAACTTCTCCTGCTATTGTGCCACCAAAGAAGCTTCGTCAGTGTCCAGAGCCAACTTCAACAGTTGAAAAACTTGGTCTGAAAAAAGCCCCTAGGAAGGCATTTGAGTTGTCCCAGAGGTCTCTGGAGTGTATAGTCCAATTACGTGACCACGGGAAGACTGTTGGAGTAGTTGACGCCCCCAAGAAAGCTAAATTAATTTCTCCTCAGACTCTTTCTATCAAAAATAATAAGAAGCTTCTGACAAGCCAGGATCTTCAATTTCAAAGGCTTATGAGATCCAGATCACATAAAAAACGAGACTTTGATTACAAAAATACTGATACTGTAAGAGTGTCACGCATAGTACAGGGATCAGATGTACTTGAAGCAGACTCTGATGAGCCAGATGATCATAGAGTAAGTGAGCCACTTGCCATCAGTAATGAAAAACAGTTAGCAAAATGCATGCTTTCCAAAACAGAAGTGGCAGAAGCCTCTTCTGATCCTTGGGTGACAGGTATAACTTGTCTTGTGAACCAGTGTGAATCTAGAGTGTTAAGTGGAGGAGTGCCAACAGATGTGGTGATGGTCTCTGCTTCAGAGGACCCTGTGGATGGAGGTGCTGTCACAGTTCAAGTTGGGGAGGTGGCATCTGTGAAAGCTGCAGAGCCAGCGTCTAGTAGTGATACAGATGATGATGACAACTTATTCCTAACACAACATGATCCTCAAGATATGGATCTGTGCTCACAGTTGGAAAATAAAACCATTATCGTGGCTCATAAAAAAGATACAGTTCAGAGAGAAGATTCTTTAAGTCGGCCTCAGTTGGAGTCTTTGAGTATCACAAAGTGTAAATACAAAGACTGTGTCGAAACTACAAAAAACCAGGGTGAATACTGCCCAAGACACTCTGAAGCTAAAGCAGCAGATGACGGCCTGTTCCGTAAACCTGGCTTGCCTCTTTCTGTAGCCAGGCCCTTGAGACCTACTACTACCAAGATATTTAGCTCAAGCAGCGCTTCACGAACTGCCAATCTTTCCAAGTCTTTGGAAAGTACTACACTTCAGCAGTCAGCACTAAAAAATAAGTCAAGTGGAGCGCAGCCTAATTTGAAGGTGACACCACCCTCTTCCATGGGTTCTCAGAAGCCAGTGGCTGAGGTGAAAAGTCTATGCAATATTTTTCATTTTCAGACTCCAAGCAGTTCCAGCAAACAGAGTTGCAAGCTTACATTTAGTGAGAACAGGCCTACATCAGCTGCTTCTCCAGTGAATATTCTCTTGCCATCGCAGTCTATCTTTGACACCTTCATTAAAGAGGTCTTAAAATGGAAATACCAAATGTTTTTGAACTTTGATAAGTGTGGTGCTCCAACAAGTCTCTGTCAGTCTATCTCAAGACCTGTGCCTGTCCGATTTCAAGATTGTGCAGAATATTTTAATGTTTTTCTACCTTTGATTATATTGAATGCTTTTGAAACAGTGGCACAGGAATGGCTGAGCTCTCCAAATAAAGAGAATTTCTATCAGTTGCAATTACGAAAATTTCCAGCTGACTATAAAAAATACTGGGAGTTTCTGATTTACTTGAACGAATCTGAACTTGCTAAACAGCTTCACCCAAAGGAAAATGATCTGGTGTTTCTGGCTCCTGAGAAGAGTTATATGGACAGGCATGGCATGCAAGATTGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGTCGCACTTCAGTT
Peptide sequence:
MIWCFWLLRRVIWTGMACKIAVTITVAMFISFVALQLVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMEKQSDDDSMDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNESYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNFNPEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILISVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFVRSCEKSPGSTSRGAAIMSSLALHSVQSNSVQLACVQLIRGLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTGQETHELQMCLKQIIRNIKFKMPQYSTFGDSTSTFKTPPSFKEESDKIDRKHKKNIYCLENCSPVSSKEPMKADTHRVLMKVNTTEEENFKQHYIDLNEEEQEPLPAELCLKQKSEALFSESAQEQVKISAEKSGKESSSYAPSNSTSRNGPEWGCDRGVIMSAHSLTDSSSDFMEQVSTSNEDVSLKDGSVGKTSKPSFKLQKDEICAKLSHVIKKQIRKSTLVDNIIDLEENTAISDLENCSGTDGGALKEDSIGHNVPSDPVLDDKHEEQKSQNSSLFKKEIKSEELDNSSSDDEDKLQIQEGRADDDLVSFTEVTDTLVKAPCEGHVKMVVESRDKEMRESTALTSNLVEGQVPHDSSKPLVAGRQIDLCNITLISQTTVIQFPSGLSKQNSFQLQKGDKRCLTANQNSAATCRGQVIVISDSDEEEDEDEDERSSSEENIKQSKACIGKDCSEHRSLAVNASVEKQLVKEEERYPVEFEDSESQVFEFESSSEVFSVWQDHKIDSKNSLQGEQKSYVTHVADSTNNNLGCGDSVSEEVVRNKAEGVKEHAGPHSSVSAEEFCKTGVKKPKRKRYDKVTAEDPQRPSSSVGTDQLPDRRDLTESDLKSADMGMATPSSSVERDSTILQKSTKSRTHSKPVRKVPASKATKKTHSDTRRGQSKSSCYISCRTSPAIVPPKKLRQCPEPTSTVEKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKAKLISPQTLSIKNNKKLLTSQDLQFQRLMRSRSHKKRDFDYKNTDTVRVSRIVQGSDVLEADSDEPDDHRVSEPLAISNEKQLAKCMLSKTEVAEASSDPWVTGITCLVNQCESRVLSGGVPTDVVMVSASEDPVDGGAVTVQVGEVASVKAAEPASSSDTDDDDNLFLTQHDPQDMDLCSQLENKTIIVAHKKDTVQREDSLSRPQLESLSITKCKYKDCVETTKNQGEYCPRHSEAKAADDGLFRKPGLPLSVARPLRPTTTKIFSSSSASRTANLSKSLESTTLQQSALKNKSSGAQPNLKVTPPSSMGSQKPVAEVKSLCNIFHFQTPSSSSKQSCKLTFSENRPTSAASPVNILLPSQSIFDTFIKEVLKWKYQMFLNFDKCGAPTSLCQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLSSPNKENFYQLQLRKFPADYKKYWEFLIYLNESELAKQLHPKENDLVFLAPEKSYMDRHGMQDCSHYYCGYVHKFRRTSV
IRESfinder result
IRESfinder score
0.687916214
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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