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mmu_circRrbp1_154
Basic information of circular RNA
PanCircBase ID:
mmu_circRrbp1_154
mm39_Chr. Position ID:
chr2|143809359|143809513|-
Gene name:
Rrbp1
Transcript:
ENSMUST00000016072.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
154
Exon/intron sizes in nt:
154
Flanking exon/introns:
chr2:143806820-143809359|chr2:143809513-143810436
Splice length:
154
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCAGAACACAGAACTGGCAAAGCTCCGACAGGAGCTCAGCAAGGTCAACAAGGAGCTAGTGGAGAAGTCAGAGGCCTCCCGGCAGGAGGAGCAACAACGGAAGGCGCTGGAAGCCAAGGCAGCCACCTTTGAGAAGCAGGTCCTACAGTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGAGGAGCAACAACGGAAG
59.96
GTTGACCTTGCTGAGCTCCT
59.96
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGAGGAGCAACAACGGAAG
59.96
AGGCCTCTGACTTCTCCACT
59.88
148
PCR template sequence:
CCCGGCAGGAGGAGCAACAACGGAAGGCGCTGGAAGCCAAGGCAGCCACCTTTGAGAAGCAGGTCCTACAGTTGCAGGCAGAACACAGAACTGGCAAAGCTCCGACAGGAGCTCAGCAAGGTCAACAAGGAGCTAGTGGAGAAGTCAGAGGCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
CCTACAGTTGCAGGCAGAACACAGAA
siRNA sets
TTCTGTGTTCTGCCTGCAA, TGTGTTCTGCCTGCAACTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.187209038
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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