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mmu_circRptor_1265
Basic information of circular RNA
PanCircBase ID:
mmu_circRptor_1265
mm39_Chr. Position ID:
chr11|119702770|119748820|+
Gene name:
Rptor
Transcript:
ENSMUST00000026671.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,5133,9716,10966,31737,34413,34808,39382,44322,45368,45891
Genomic length:
46050
Exon/intron sizes in nt:
76,102,84,111,75,66,192,141,118,141,159
Flanking exon/introns:
chr11:119690292-119702770|chr11:119748820-119756377
Splice length:
1265
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCAGGCCTGGGACCTTGCTGTGGACATTTGCCTCTCTCAGCTGCCAACCATCATCGAAGAGGGTACTGCCTTCAGGCACAGCCCATTCTTTGCCGAGCAGCTGACAGCATTCCAGGTGTGGCTCACAATGGGTGTGGAAAACAGGAGCCCCCCAGAGCAGCTGCCCATCGTCCTGCAGGTGCTGCTAAGCCAGGTGCACCGGCTGAGAGCATTGGACTTGCTGGGACGGTTTTTGGACTTGGGCCCTTGGGCGGTGAGCTTGGCCCTGTCGGTGGGCATCTTCCCCTATGTACTGAAGCTGCTTCAGAGCTCAGCCCGAGAGCTTCGGCCACTCCTTGTCTTCATCTGGGCCAAAATCCTCGCTGTCGACAGTTCGTGCCAAGCTGACCTCGTGAAGGACAACGGTCACAAGTACTTCCTATCCGTCTTGGCAGACCCATACATGCCAGCTGAACATAGGACCATGACAGCCTTCATTCTTGCTGTAATCGTCAACAGCTACACAACAGGGCAAGAGGCCTGCCTCCAGGGAAACCTGATTGCCATCTGTCTGGAGCAGCTCAGCGACCCACACCCCTTGCTACGCCAGTGGGTGGCCATTTGCCTGGGAAGGATCTGGCAGAACTTCGACTCTGCAAGATGGTGTGGGGTGAGAGACAGTGCCCACGAAAAGCTCTATAGCCTCCTCTCTGACCCCATCCCTGAGGTCCGATGTGCAGCTGTATTTGCCCTGGGCACCTTTGTGGGAAATTCTGCTGAGAGGACAGACCACTCTACCACCATTGACCACAATGTGGCCATGATGCTGGCTCAGCTGATCAATGATGGAAGCCCCATGGTCCGGAAGGAGCTGGTGGTGGCTCTGAGTCACCTTGTAGTCCAATATGAAAGCAATTTCTGCACTGTGGCCCTGCAGTTCATGGAGGAAGAAAAGAACTACCCTTTGCCTTCTCCAGCAGCCACAGAGGGAGGGAGCTTGACCCCAGTTCGAGACAGCCCATGCACCCCCAGACTCCGTTCAGTGAGCTCCTATGGGAACATCCGAGCCGTCACGACAGCTAGGAACCTGAACAAATCTTTGCAGAATCTGAGCTTGACGGAAGAATCGGGCAGCTCAGTGGCCTTCTCTCCCGGGAACCTCAGCACCAGCAGCAGTGCCAGCAGCACCTTGGGGAGCCCTGAGAACGAGGAGTACATCCTGTCCTTCGAGACCATCGACAAGATGCGGCGTGTGAGCTCCTACTCAGCGCTCAACTCCCTCATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCCTGAGAACGAGGAGTA
59.67
TTCGATGATGGTTGGCAGCT
60.04
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCCTGAGAACGAGGAGTA
59.67
TGATGGTTGGCAGCTGAGAG
60.04
144
PCR template sequence:
ACCTTGGGGAGCCCTGAGAACGAGGAGTACATCCTGTCCTTCGAGACCATCGACAAGATGCGGCGTGTGAGCTCCTACTCAGCGCTCAACTCCCTCATAGGCAGGCCTGGGACCTTGCTGTGGACATTTGCCTCTCTCAGCTGCCAACCATCATCGAAGAGGGTACTGCCTTCAGGCACAGCCCATTCTTTGCCGAGCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-18a-5p(2), mmu-miR-103-3p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-758-3p(1), mmu-miR-107-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AACTCCCTCATAGGCAGGCCTGGGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRPTOR_1265_ORF_1
1.1388
0.317241361
0.999154952
1242
ORF sequence:
ATGGGTGTGGAAAACAGGAGCCCCCCAGAGCAGCTGCCCATCGTCCTGCAGGTGCTGCTAAGCCAGGTGCACCGGCTGAGAGCATTGGACTTGCTGGGACGGTTTTTGGACTTGGGCCCTTGGGCGGTGAGCTTGGCCCTGTCGGTGGGCATCTTCCCCTATGTACTGAAGCTGCTTCAGAGCTCAGCCCGAGAGCTTCGGCCACTCCTTGTCTTCATCTGGGCCAAAATCCTCGCTGTCGACAGTTCGTGCCAAGCTGACCTCGTGAAGGACAACGGTCACAAGTACTTCCTATCCGTCTTGGCAGACCCATACATGCCAGCTGAACATAGGACCATGACAGCCTTCATTCTTGCTGTAATCGTCAACAGCTACACAACAGGGCAAGAGGCCTGCCTCCAGGGAAACCTGATTGCCATCTGTCTGGAGCAGCTCAGCGACCCACACCCCTTGCTACGCCAGTGGGTGGCCATTTGCCTGGGAAGGATCTGGCAGAACTTCGACTCTGCAAGATGGTGTGGGGTGAGAGACAGTGCCCACGAAAAGCTCTATAGCCTCCTCTCTGACCCCATCCCTGAGGTCCGATGTGCAGCTGTATTTGCCCTGGGCACCTTTGTGGGAAATTCTGCTGAGAGGACAGACCACTCTACCACCATTGACCACAATGTGGCCATGATGCTGGCTCAGCTGATCAATGATGGAAGCCCCATGGTCCGGAAGGAGCTGGTGGTGGCTCTGAGTCACCTTGTAGTCCAATATGAAAGCAATTTCTGCACTGTGGCCCTGCAGTTCATGGAGGAAGAAAAGAACTACCCTTTGCCTTCTCCAGCAGCCACAGAGGGAGGGAGCTTGACCCCAGTTCGAGACAGCCCATGCACCCCCAGACTCCGTTCAGTGAGCTCCTATGGGAACATCCGAGCCGTCACGACAGCTAGGAACCTGAACAAATCTTTGCAGAATCTGAGCTTGACGGAAGAATCGGGCAGCTCAGTGGCCTTCTCTCCCGGGAACCTCAGCACCAGCAGCAGTGCCAGCAGCACCTTGGGGAGCCCTGAGAACGAGGAGTACATCCTGTCCTTCGAGACCATCGACAAGATGCGGCGTGTGAGCTCCTACTCAGCGCTCAACTCCCTCATAGGCAGGCCTGGGACCTTGCTGTGGACATTTGCCTCTCTCAGCTGCCAACCATCATCGAAGAGGGTACTGCCTTCAGGCACAGCCCATTCTTTGCCGAGCAGCTGA
Peptide sequence:
MGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQLSDPHPLLRQWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVGNSAERTDHSTTIDHNVAMMLAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQFMEEEKNYPLPSPAATEGGSLTPVRDSPCTPRLRSVSSYGNIRAVTTARNLNKSLQNLSLTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALNSLIGRPGTLLWTFASLSCQPSSKRVLPSGTAHSLPSS
IRESfinder result
IRESfinder score
0.523464098
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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