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mmu_circRps6ka2_117
Basic information of circular RNA
PanCircBase ID:
mmu_circRps6ka2_117
mm39_Chr. Position ID:
chr17|7495311|7495428|+
Gene name:
Rps6ka2
Transcript:
ENSMUST00000024575.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
117
Exon/intron sizes in nt:
117
Flanking exon/introns:
chr17:7437842-7495311|chr17:7495428-7503444
Splice length:
117
Other database IDs:
CIRCpedia: HSA_CIRCpedia_153513
Human Ortholog IDs:
Mature spliced Sequence:
GAAGAAGGCATTGTGAAGGAGATTGACATTAGCAACCATGTGAAGGAAGGCTTTGAGAAGGCAGACCCCTCCCAGTTCGAGCTACTAAAGGTTTTAGGACAAGGGTCGTATGGAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTCCCAGTTCGAGCTACT
60.68
GCCTTCCTTCACATGGTTGC
59.76
102
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGACCCCTCCCAGTTCGAG
60.31
GCCTTCCTTCACATGGTTGC
59.76
106
PCR template sequence:
GGCAGACCCCTCCCAGTTCGAGCTACTAAAGGTTTTAGGACAAGGGTCGTATGGAAAGGAAGAAGGCATTGTGAAGGAGATTGACATTAGCAACCATGTGAAGGAAGGCTTTGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GTCGTATGGAAAGGAAGAAGGCATTG
siRNA sets
CAATGCCTTCTTCCTTTCC, AATGCCTTCTTCCTTTCCA, TTCTTCCTTTCCATACGAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.442674093
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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