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mmu_circRims2_3059
Basic information of circular RNA
PanCircBase ID:
mmu_circRims2_3059
mm39_Chr. Position ID:
chr15|39300392|39479906|+
Gene name:
Rims2
Transcript:
ENSMUST00000082054.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
17
Exon/intron indexes:
6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22
Exon/intron offsets:
0,15227,17363,19681,20767,22592,25501,35337,39383,41560,69969,72648,74267,98875,129946,148593,179272
Genomic length:
179514
Exon/intron sizes in nt:
926,209,120,100,124,47,113,131,172,154,69,157,111,110,101,173,242
Flanking exon/introns:
chr15:39209016-39300392|chr15:39479906-39538335
Splice length:
3059
Other database IDs:
CIRCpedia: MMU_CIRCpedia_19136, circAtlas: mmu-Rims2_0097
CIRCpedia: HSA_CIRCpedia_126012
Human Ortholog IDs:
Mature spliced Sequence:
AAAACGAAGTCCATCAGTGTCCAGGGATCAAAATCGAAGATACGAGCAAAGTGAAGAAAGAGAGGACTACTCACAGTATGTTCCTTCAGATGGTACAATGCCAAGATCTCCTTCGGATTATGCTGATAGACGATCTCAGCGTGAGCCTCAATTTTATGAAGAACCTGGTCATTTAAATTACAGGGATTCTAACAGGAGAGGCCATAGACATTCCAAAGAGTATATTGTGGATGATGAAGATGTGGAGAGCAGAGATGAATATGAAAGACAAAGGAGAGAGGAGGAATACCAGGCACGCTACAGAAGTGATCCAAATCTGGCCCGGTATCCCGTAAAGCCACAACCCTACGAAGAACAAATGCGCATCCACGCTGAGGTGTCCAGGGCACGACATGAGAGAAGGCACAGTGATGTTTCTTTGGCAAACGCTGAACTAGAAGATTCCAGGATTTCTCTGCTAAGGATGGATAGACCATCAAGGCAAAGATCTGTATCTGAACGTAGAGCTGCAATGGAAAACCAACGATCGTATTCAATGGAAAGAACTCGAGAGGCTCAGGGACAAAGTTCTTATCCACAAAGGACCTCAAATCATAGTCCTCCCACCCCTCGGCGGAGCCCTATACCGCTTGATAGACCAGACATGAGGCGCGCTGACTCCCTACGGAAACAGCACCACTTAGATCCCAGCTCTGCTGTGAGGAAAACGAAGCGAGAAAAAATGGAAACCATGTTAAGGAATGATTCTTTGAGTTCAGACCAGTCCGAGTCAGTGAGGCCGCCCCCACCAAGGCCTCATAAATCCAAGAAAGGAGGTAAAATGCGCCAGGTTTCACTGAGCAGCTCGGAGGAGGAGCTGGCATCCACACCTGAGTATACAAGCTGTGATGATGTGGAGCTGGAAAGCGAGAGTGTGAGTGAGAAAGGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGGAGTTTTGTCGGATTCTAACACCAGGTCTGAGAGACAAAAGAAAAGGATGTACTATGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAGCCTCAGATTAAGGACTCTGGGGTAGATACCTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAGCACCCTGTGACCTGGCAGCCATCCAAAGATGGAGATCGCCTAATTGGTCGTATTTTATTAAATAAGCGTTTAAAAGATGGGAGTGTACCTCGAGACTCAGGAGCAATGCTGGGCTTAAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGACTTTGTGCATTTATTACCAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTCTTGGAATGGAATGGGAGGCTATTGCAAGGAGCCACATTTGAGGAAGTTTACAACATTATTCTAGAATCCAAACCTGAACCACAAGTTGAGCTTGTTGTTTCAAGGCCAATTGGAGATATTCCTAGAATACCTGATAGCACGCATGCACAACTGGAATCCAGTTCTAGCTCATTTGAATCTCAAAAAATGGACCGTCCTTCTATATCCGTTACCTCACCCATGAGTCCTGGCATGCTGAGGGATGTCCCGCAGTTCTTATCTGGACAGCTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAGTTGATAGTTACAATTTTGGGAGCAAAGGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAGATTTACTTCCTTCCAGATAGAAGTGATAAAAATAAGAGAAGAACAAAAACAGTCAAGAAAACTTTGGAACCCAAATGGAACCAGACTTTCATTTATTCTCCTGTCCACCGAAGAGAATTCCGTGAACGAATGCTGGAAATTACCCTTTGGGATCAAGCTAGAGTTCGAGAAGAAGAGAGCGAATTCTTAGGAGAGATTTTAATTGAATTGGAAACAGCTTTGCTAGATGATGAGCCGCACTGGTATAAGCTGCAGACCCATGATGTCTCCTCATTGCCACTCCCTCGCCCTTCCCCATATCTGCCCCGGAGGCAGCTCCATGGAGAGAGCCCAACGCGCAGGCTGCAAAGGTCGAAGAGAATAAGTGACAGTGAAGTGTCTGACTACGACTGCGAGGATGGCGTGGGAGTAGTGTCAGATTATCGACACAATGGCCGCGATCTTCAAAGCTCCACGTTGTCGGTGCCAGAACAAGTCATGTCATCAAATCATTGCTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACAAGGTCATGGTCGCCTAGTGCCCCTCCTCCTCAAAGGAATGTGGAACAGGGGCACCGAGGGACACGTGCTACTGGCCATTACAACACAATTAGCCGAATGGATAGACACCGTGTCATGGATGACCACTACTCTTCAGATAGAGACAGGTCTCACCCTCGTACCGGGTCTGTCCAGACAAGCCCATCAAGTACTCCGGGAACAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACATTGGAGAGAAGTGCTATGGATATAGAGGAGAGAAATCGCCAAATGAAACTTAACAAATACAAACAGGTAGCCGGATCAGACCCCAGACTGGAGCAAGATTACCATTCGAAGTATCGCTCAGGATGGGATCCACATAGAGGGGCAGATACTGTTTCCACTAAATCCTCGGACAGTGATGTAAGTGATGTATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCCGTCCAATCAGAGCGGCCGAGAGGAAACAGGAAAATCAGTGTCTTTACATCCAAAATGCAAAACAGACAGATGGGCGTGTCGGGGAAGAACTTGACCAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGACGGCAGCCAGTCCGACACTGCAGTGGGCGCCCTGGGTACCAGTGGCAAGAAGCGGCGATCTAGCATTGGGGCCAAAATGGTAGCTATTGTTGGTCTCTCACGGAAAAGTCGCAGTGCCTCTCAACTCAGCCAAACCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGATCTAGCATTGGGGCCAA
60.18
CCTCTCTTTCTTCACTTTGCTCG
59.57
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGCGGCGATCTAGCATT
59.61
CCTCTCTTTCTTCACTTTGCTCG
59.57
155
PCR template sequence:
ACCAGTGGCAAGAAGCGGCGATCTAGCATTGGGGCCAAAATGGTAGCTATTGTTGGTCTCTCACGGAAAAGTCGCAGTGCCTCTCAACTCAGCCAAACCGAAAACGAAGTCCATCAGTGTCCAGGGATCAAAATCGAAGATACGAGCAAAGTGAAGAAAGAGAGGACTACTCACAGTATGTTCCTTCAGATGGTACAATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(2), mmu-miR-9-5p(1), mmu-miR-150-5p(1), mmu-miR-146a-5p(1), mmu-miR-320-3p(1), mmu-miR-125b-5p(1), mmu-miR-139-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-425-5p(1), mmu-miR-362-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-673-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCAGCCAAACCGAAAACGAAGTCCA
siRNA sets
CTTCGTTTTCGGTTTGGCT, GACTTCGTTTTCGGTTTGG, ACTTCGTTTTCGGTTTGGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRIMS2_3059_ORF_1
0.7412
0.118125409
0.999999995
3138
ORF sequence:
ATGCCAAGATCTCCTTCGGATTATGCTGATAGACGATCTCAGCGTGAGCCTCAATTTTATGAAGAACCTGGTCATTTAAATTACAGGGATTCTAACAGGAGAGGCCATAGACATTCCAAAGAGTATATTGTGGATGATGAAGATGTGGAGAGCAGAGATGAATATGAAAGACAAAGGAGAGAGGAGGAATACCAGGCACGCTACAGAAGTGATCCAAATCTGGCCCGGTATCCCGTAAAGCCACAACCCTACGAAGAACAAATGCGCATCCACGCTGAGGTGTCCAGGGCACGACATGAGAGAAGGCACAGTGATGTTTCTTTGGCAAACGCTGAACTAGAAGATTCCAGGATTTCTCTGCTAAGGATGGATAGACCATCAAGGCAAAGATCTGTATCTGAACGTAGAGCTGCAATGGAAAACCAACGATCGTATTCAATGGAAAGAACTCGAGAGGCTCAGGGACAAAGTTCTTATCCACAAAGGACCTCAAATCATAGTCCTCCCACCCCTCGGCGGAGCCCTATACCGCTTGATAGACCAGACATGAGGCGCGCTGACTCCCTACGGAAACAGCACCACTTAGATCCCAGCTCTGCTGTGAGGAAAACGAAGCGAGAAAAAATGGAAACCATGTTAAGGAATGATTCTTTGAGTTCAGACCAGTCCGAGTCAGTGAGGCCGCCCCCACCAAGGCCTCATAAATCCAAGAAAGGAGGTAAAATGCGCCAGGTTTCACTGAGCAGCTCGGAGGAGGAGCTGGCATCCACACCTGAGTATACAAGCTGTGATGATGTGGAGCTGGAAAGCGAGAGTGTGAGTGAGAAAGGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGGAGTTTTGTCGGATTCTAACACCAGGTCTGAGAGACAAAAGAAAAGGATGTACTATGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAGCCTCAGATTAAGGACTCTGGGGTAGATACCTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAGCACCCTGTGACCTGGCAGCCATCCAAAGATGGAGATCGCCTAATTGGTCGTATTTTATTAAATAAGCGTTTAAAAGATGGGAGTGTACCTCGAGACTCAGGAGCAATGCTGGGCTTAAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGACTTTGTGCATTTATTACCAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTCTTGGAATGGAATGGGAGGCTATTGCAAGGAGCCACATTTGAGGAAGTTTACAACATTATTCTAGAATCCAAACCTGAACCACAAGTTGAGCTTGTTGTTTCAAGGCCAATTGGAGATATTCCTAGAATACCTGATAGCACGCATGCACAACTGGAATCCAGTTCTAGCTCATTTGAATCTCAAAAAATGGACCGTCCTTCTATATCCGTTACCTCACCCATGAGTCCTGGCATGCTGAGGGATGTCCCGCAGTTCTTATCTGGACAGCTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAGTTGATAGTTACAATTTTGGGAGCAAAGGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAGATTTACTTCCTTCCAGATAGAAGTGATAAAAATAAGAGAAGAACAAAAACAGTCAAGAAAACTTTGGAACCCAAATGGAACCAGACTTTCATTTATTCTCCTGTCCACCGAAGAGAATTCCGTGAACGAATGCTGGAAATTACCCTTTGGGATCAAGCTAGAGTTCGAGAAGAAGAGAGCGAATTCTTAGGAGAGATTTTAATTGAATTGGAAACAGCTTTGCTAGATGATGAGCCGCACTGGTATAAGCTGCAGACCCATGATGTCTCCTCATTGCCACTCCCTCGCCCTTCCCCATATCTGCCCCGGAGGCAGCTCCATGGAGAGAGCCCAACGCGCAGGCTGCAAAGGTCGAAGAGAATAAGTGACAGTGAAGTGTCTGACTACGACTGCGAGGATGGCGTGGGAGTAGTGTCAGATTATCGACACAATGGCCGCGATCTTCAAAGCTCCACGTTGTCGGTGCCAGAACAAGTCATGTCATCAAATCATTGCTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACAAGGTCATGGTCGCCTAGTGCCCCTCCTCCTCAAAGGAATGTGGAACAGGGGCACCGAGGGACACGTGCTACTGGCCATTACAACACAATTAGCCGAATGGATAGACACCGTGTCATGGATGACCACTACTCTTCAGATAGAGACAGGTCTCACCCTCGTACCGGGTCTGTCCAGACAAGCCCATCAAGTACTCCGGGAACAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACATTGGAGAGAAGTGCTATGGATATAGAGGAGAGAAATCGCCAAATGAAACTTAACAAATACAAACAGGTAGCCGGATCAGACCCCAGACTGGAGCAAGATTACCATTCGAAGTATCGCTCAGGATGGGATCCACATAGAGGGGCAGATACTGTTTCCACTAAATCCTCGGACAGTGATGTAAGTGATGTATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCCGTCCAATCAGAGCGGCCGAGAGGAAACAGGAAAATCAGTGTCTTTACATCCAAAATGCAAAACAGACAGATGGGCGTGTCGGGGAAGAACTTGACCAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGACGGCAGCCAGTCCGACACTGCAGTGGGCGCCCTGGGTACCAGTGGCAAGAAGCGGCGATCTAGCATTGGGGCCAAAATGGTAGCTATTGTTGGTCTCTCACGGAAAAGTCGCAGTGCCTCTCAACTCAGCCAAACCGAAAACGAAGTCCATCAGTGTCCAGGGATCAAAATCGAAGATACGAGCAAAGTGAAGAAAGAGAGGACTACTCACAGTATGTTCCTTCAGATGGTACAATGCCAAGATCTCCTTCGGATTATGCTGATAGACGATCTCAGCGTGAGCCTCAATTTTATGAAGAACCTGGTCATTTAA
Peptide sequence:
MPRSPSDYADRRSQREPQFYEEPGHLNYRDSNRRGHRHSKEYIVDDEDVESRDEYERQRREEEYQARYRSDPNLARYPVKPQPYEEQMRIHAEVSRARHERRHSDVSLANAELEDSRISLLRMDRPSRQRSVSERRAAMENQRSYSMERTREAQGQSSYPQRTSNHSPPTPRRSPIPLDRPDMRRADSLRKQHHLDPSSAVRKTKREKMETMLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVELESESVSEKGDSQKGKRKTSEQGVLSDSNTRSERQKKRMYYGGHSLEEDLEWSEPQIKDSGVDTCSSTTLNEEHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGMLRDVPQFLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDVSSLPLPRPSPYLPRRQLHGESPTRRLQRSKRISDSEVSDYDCEDGVGVVSDYRHNGRDLQSSTLSVPEQVMSSNHCSPSGSPHRVDVIGRTRSWSPSAPPPQRNVEQGHRGTRATGHYNTISRMDRHRVMDDHYSSDRDRSHPRTGSVQTSPSSTPGTGRRGRQLPQLPPKGTLERSAMDIEERNRQMKLNKYKQVAGSDPRLEQDYHSKYRSGWDPHRGADTVSTKSSDSDVSDVSAVSRTSSASRFSSTSYMSVQSERPRGNRKISVFTSKMQNRQMGVSGKNLTKSTSISGDMCSLEKNDGSQSDTAVGALGTSGKKRRSSIGAKMVAIVGLSRKSRSASQLSQTENEVHQCPGIKIEDTSKVKKERTTHSMFLQMVQCQDLLRIMLIDDLSVSLNFMKNLVI
IRESfinder result
IRESfinder score
0.471895653
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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