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mmu_circRic1_2885
Basic information of circular RNA
PanCircBase ID:
mmu_circRic1_2885
mm39_Chr. Position ID:
chr19|29554982|29580180|+
Gene name:
Ric1
Transcript:
ENSMUST00000043610.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20,21,22,23,24,25
Exon/intron offsets:
0,2182,6592,6884,8198,8957,10125,17216,17688,20164,20407,22249,23235,24690,25009
Genomic length:
25198
Exon/intron sizes in nt:
15,32,04,39,11,19,01,60,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:29553302-29554982|chr19:29580180-29581260
Splice length:
2885
Other database IDs:
CIRCpedia: MMU_CIRCpedia_15506, circAtlas: mmu-C030046E11Rik_0017
Human Ortholog IDs:
Mature spliced Sequence:
AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATGAGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGTTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAGGCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTCTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGGAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAGTGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGGGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCGCTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGATTGCTCAGTCTTCCG
59.75
ATCTGAGTGTGCTGAGAGCC
59.46
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGATTGCTCAGTCTTCCGA
59.46
ATCTGAGTGTGCTGAGAGCC
59.46
157
PCR template sequence:
AGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTGAGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
35
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(2), mmu-miR-7a-5p(2), mmu-miR-20b-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-181a-5p(1), mmu-miR-200c-3p(1), mmu-miR-205-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-196a-5p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-381-3p(1), mmu-miR-128-3p(1), mmu-miR-503-5p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-212-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-511-3p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTCTACAGACTGAGCTGGGGTGCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRIC1_2885_ORF_1
0.8844
0.187872407
0.999999994
3042
ORF sequence:
ATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTGAGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATGAGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGTTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAGGCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTCTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGGAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAGTGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGGGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCGCTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGAC
Peptide sequence:
MSGLVCCHRPDSQRILSGQSASWDCSVFRDGWRDVTEHKIRAASSGPLGLYRLSWGAEGYHLWVISGLGSQHTQIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDRQEELRIYLRTSNLDNAFAHVTKAPMETLLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGISLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRSSAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTGPSGKRWSKDSECAENMYIDMMLWRHARRLLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQMLKSQSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPGPQMQDAFLSPLSNKGDECSIGSATDLTESSSVVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCVVIGLILRESSVVSQLLGIAQSSEMDGEMLQNIKSGLQAVDRWASTD
IRESfinder result
IRESfinder score
0.570900454
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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