top of page
mmu_circRic1_1988
Basic information of circular RNA
PanCircBase ID:
mmu_circRic1_1988
mm39_Chr. Position ID:
chr19|29572198|29580180|+
Gene name:
Ric1
Transcript:
ENSMUST00000043610.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
18,19,20,21,22,23,24,25
Exon/intron offsets:
0,472,2948,3191,5033,6019,7474,7793
Genomic length:
7982
Exon/intron sizes in nt:
1,17,72,91,59,13,72,87,00,00,00,000
Flanking exon/introns:
chr19:29565246-29572198|chr19:29580180-29581260
Splice length:
1988
Other database IDs:
circBase: hsa_circ_0086287
Human Ortholog IDs:
Mature spliced Sequence:
GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTCTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGGAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAGTGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGGGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCGCTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGATTGCTCAGTCTTCCG
59.75
CTGACCTGTCCCTCTGCATC
59.82
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGATTGCTCAGTCTTCCG
59.75
ATCATGATGAGCTGTCCCGC
60.25
146
PCR template sequence:
AGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTGGCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-7b-5p(1), mmu-miR-181a-5p(1), mmu-miR-205-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-7a-5p(1), mmu-miR-196a-5p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-128-3p(1), mmu-miR-503-5p(1), mmu-miR-433-3p(1), mmu-miR-511-3p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTCTACAGACTGGCTCGTGATGCAG
siRNA sets
ACGAGCCAGTCTGTAGAGG, ATCACGAGCCAGTCTGTAG, TCACGAGCCAGTCTGTAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRIC1_1988_ORF_1
0.9124
0.209800524
0.999996941
2145
ORF sequence:
ATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTGGCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTCTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGGAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAGTGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGGGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCGCTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGAC
Peptide sequence:
MSGLVCCHRPDSQRILSGQSASWDCSVFRDGWRDVTEHKIRAASSGPLGLYRLARDAESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRSSAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTGPSGKRWSKDSECAENMYIDMMLWRHARRLLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQMLKSQSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPGPQMQDAFLSPLSNKGDECSIGSATDLTESSSVVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCVVIGLILRESSVVSQLLGIAQSSEMDGEMLQNIKSGLQAVDRWASTD
IRESfinder result
IRESfinder score
0.571638386
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page