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mmu_circRic1_1552
Basic information of circular RNA
PanCircBase ID:
mmu_circRic1_1552
mm39_Chr. Position ID:
chr19|29544619|29565246|+
Gene name:
Ric1
Transcript:
ENSMUST00000043610.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
5,6,7,8,9,10,11,12,13,14,15,16,17
Exon/intron offsets:
0,265,2122,3526,7512,8634,10363,12545,16955,17247,18561,19320,20488
Genomic length:
20627
Exon/intron sizes in nt:
1,43,13,79,28,91,45,49,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:29539492-29544619|chr19:29565246-29572198
Splice length:
1552
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGTTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAGCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAGTGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTGACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGCTTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATGAGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATGAGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGTTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACGGTACATTCCTCACCCC
60.11
AGTCCATCAGAAGTTGCAACA
57.79
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACGGTACATTCCTCACCCC
60.11
AGTCCATCAGAAGTTGCAACAA
58.45
140
PCR template sequence:
CTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAGTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-135a-5p(1), mmu-miR-200c-3p(1), mmu-miR-322-5p(1), mmu-miR-7a-5p(1), mmu-miR-138-5p(1), mmu-miR-381-3p(1), mmu-miR-136-5p(1), mmu-miR-212-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-382-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AATGCCGCAGCAGTTTGCAGTCTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRIC1_1552_ORF_1
0.7475
0.082170787
0.99938077
1521
ORF sequence:
ATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGTTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAGCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAGTGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTGACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGCTTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATGAGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATGAGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAGATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGGAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGTTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAGTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGA
Peptide sequence:
MTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGLGSQHTQIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDRQEELRIYLRTSNLDNAFAHVTKAPMETLLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGISLKMPQQFAVCAGRSPCCNF
IRESfinder result
IRESfinder score
0.617875129
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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